Scaffold Ga0335020

Basic Information
Taxon OID	3300034082 Open in IMG/M
Scaffold ID	Ga0335020_0005549 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034082 Open in IMG/M

Scaffold ID

Ga0335020_0005549 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8037
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (20.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

8037

Total Scaffold Genes

20 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (20.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018001	Metagenome	237	Y
F019478	Metagenome	229	Y
F025032	Metagenome	203	N
F041776	Metagenome	159	N
F085695	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335020_0005549_1254_1559	F019478	N/A	MLLKIINVNKMVGTVYWNRRFKCLQVHETDTNYRFQFDDVQIPNKYVWVEVRKDGHYNQEHQVWEYRLNYMKCPHHVVTAEWFEDYKNVIDTFGSALKNSM
Ga0335020_0005549_1570_1983	F085695	GAG	MRTKGMGKIVLSATPKGVHNFKDLYTMNKKLTIENFDKDLNMGIFYGWDVISADETEDSYLFQVQNRTDNKLRVYITLGRELQYSELPYYPEMMYQCYIHDDEGHWSNRSWFRVHDITYKNFWELIEETITNHHLPF
Ga0335020_0005549_1986_2297	F041776	N/A	MLKIENFNKIRNQWYGDWQIGRTDEGNSYYALNARHKDGKRSIAVIIYKQDKLDTEFAETAYNISLMDDSVGSSSIIDDIIYKSVLEDMELFGEALVHYLNTI
Ga0335020_0005549_5103_5450	F025032	N/A	MEGESNVDKFTFKQRDAGGVRPSYQNTKLVKQGSAGDYVKYNVMVMGKFGGTIYYNKADKTMIANGGESNTTFPPKRFKSIEDAINYVGGNSTRSYNTNIPLDGMDTSFGTARYV
Ga0335020_0005549_7500_7802	F019478	GAG	MILKIKNTNRLVGTQFWNGRFKCLQVHETDTNYRFQFDDSEITGRYVWIEVSKIGRMDSDGDWTYLLNYKRCNQHLVTAKWFEDWKNVTKTFGDALKKQF
Ga0335020_0005549_904_1248	F018001	N/A	MLTIQNIEYLKGQELNDWRILDAGQDLRAQLGKNIYLLTFARIDKIGVMQDDRAGVIIDRNINPLLKGYHIKIVYESWDYEIDTIVWPAENIRNKDVFFGRILYKINEEYYKRK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335020_0005549

Overview

Ecosystem & Geography

Associated Families

Sequences