Scaffold Ga0335020

Basic Information
Taxon OID	3300034082 Open in IMG/M
Scaffold ID	Ga0335020_0005121 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034082 Open in IMG/M

Scaffold ID

Ga0335020_0005121 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8416
Total Scaffold Genes	18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (27.78%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

8416

Total Scaffold Genes

18 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (27.78%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005024	Metagenome / Metatranscriptome	414	Y
F006107	Metagenome / Metatranscriptome	381	N
F009398	Metagenome / Metatranscriptome	318	N
F018915	Metagenome / Metatranscriptome	232	Y
F032259	Metagenome / Metatranscriptome	180	Y
F038227	Metagenome / Metatranscriptome	166	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335020_0005121_1895_2377	F006107	GGA	MNAVALRAELAVADYLAAANWSASGAGTPTCLTSYSRGLYDDPDDQDVMPNFPRLVVSTNSARPMQRTDLTCEIEIAVELQLSADDTDEAAVLTTVQVLDNLILPLFDDTGASALNAAANDASGPFTAQFAAPLDFGASSISNRSRTFTRTFTLYCSATT
Ga0335020_0005121_2374_3153	F005024	GAGG	MTVDSSKFDAAMKQYLLTTSRDLHKAINSRFFYLMVRLFVLVPPKSPGQERRRIADYLGTPVGDINRKSKKTGKRVGKSRILRRVHLIAQSKEAKGGRRGLYGEEMKAAASALMRKAIGSVGYLRSGVVKMIRVYNKGFSQFQSAKWKPLSKPPGYKAPKQTNGALISLANQYGLNEENVATHKGTKARGFQAVPGFNPTASVVMTAGVADNQYNRVAGIYNTAMQKAFDDETTEMVNHMTEALLANGKVLEDNGISIK
Ga0335020_0005121_3168_3623	F009398	N/A	MTTIGSSLQQGMAVLQQMLGAPMFIWQGTSIRCIPAAVNDANVPISGGFQDNVTSRILVMFSDWKTCDSTLVSMDSTLYTLDQGATFSRLLKEDGQFILQENSDRIALTFCKPRPVVGRTLVYQGRTLRILSCRVDASGAYYNLELGAKTK
Ga0335020_0005121_4125_4238	F032259	N/A	MLAKPVKASVYAFDADKKLVGPSRVTLPAGWYVLPKK
Ga0335020_0005121_4246_4419	F018915	N/A	VNWIYQILKALLDWFRETPPTDVQHGKAPEALKSDLAGRIADLPGLPDDTGGPGPFR
Ga0335020_0005121_6427_6657	F038227	N/A	MISIGIALNRLFSGQAGGTDAPVLLRDVLREDEGFLWQEDGTSKLVITLGTFDSLLREDAGFLQQEDLFKLAIQSN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335020_0005121

Overview

Ecosystem & Geography

Associated Families

Sequences