NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335020_0004757

Scaffold Ga0335020_0004757


Overview

Basic Information
Taxon OID3300034082 Open in IMG/M
Scaffold IDGa0335020_0004757 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8758
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (71.43%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049633Metagenome / Metatranscriptome146Y
F051131Metagenome / Metatranscriptome144N
F052593Metagenome / Metatranscriptome142Y
F073556Metagenome / Metatranscriptome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0335020_0004757_4127_4636F051131AGGAMSNPNFVYSGATFLRFATFAELQARDSRVFEANEDLTQAEIENFLNMASQRILTQIRNSSWWREYQRKLADIIDPNLLPVVDPDYILARTQEFKDLNIYLALHEYTYPTIADFGNPDSAEIAKIKFYKDSYNVLFDEVLEAGDWYDFSENATIETADKMAAFVNRVRVR
Ga0335020_0004757_4633_5025F049633GAGMRTQLLTYLTAQLTGSIKTSQELPFEEGTNALYLKNARRVYLDEPYTEQDTLFPTLGTLQINSRITIVRWYLSVDAKQRNTDLDSALTILGSAKDITTITGVYTRLFDYTVTIDNDRVVYEGEYRFANLA
Ga0335020_0004757_5038_5505F052593AGGAMAYIFPAPGVAGVQATLTLSLVGDLLDLIVPAMQDITVNNSNDVFTWTQLDSGSKLNVATTATNGLDLNVVLDQTVFFGTGAGANVAINKGIFGLSKDKTLTNFSLYLGDTSTGSAGKTISGQAYITGLAPTVSADAPVWVSPVTLTVTGDYTVV
Ga0335020_0004757_5589_5765F073556AGGAGMIFDDKTDSEIFRSIEAEVAKALSELRCAKRDLEQAEVRMKFALATIHYLKQRYEDMK
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