Scaffold Ga0335020

Basic Information
Taxon OID	3300034082 Open in IMG/M
Scaffold ID	Ga0335020_0003232 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034082 Open in IMG/M

Scaffold ID

Ga0335020_0003232 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10888
Total Scaffold Genes	31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	25 (80.65%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	8 (88.89%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

10888

Total Scaffold Genes

31 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

25 (80.65%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

8 (88.89%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000311	Metagenome / Metatranscriptome	1326	Y
F000714	Metagenome / Metatranscriptome	924	Y
F001562	Metagenome / Metatranscriptome	670	Y
F002245	Metagenome / Metatranscriptome	578	Y
F002598	Metagenome / Metatranscriptome	544	Y
F003690	Metagenome / Metatranscriptome	473	Y
F005741	Metagenome / Metatranscriptome	391	Y
F009143	Metagenome / Metatranscriptome	322	Y
F017995	Metagenome / Metatranscriptome	237	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335020_0003232_1725_1892	F009143	AGGGGG	MMTKWDTIQADVADAYVYIDEEEMYNKAIEEGLEIGSDDFDDDELSKALTLDWND
Ga0335020_0003232_2014_2169	F003690	GAGG	MTISGFELLISNEYGIEFDSFLGAIYLPWHTILITTALLIAYKIYKRKNNK
Ga0335020_0003232_2275_2472	F001562	GGGGG	MNKTQFEKDLEIKESFIDLLNDIYPTVKIGYSTFTPAEILECCDPVAFAIGLVEHQDYLVELENE
Ga0335020_0003232_2875_3084	F002598	AGAAGG	MATKLYTIEGLLIGKTYRSTSRHFEGEIVSAEPRPEIYYGDNTEAYLIGFNYKGSIKTQYATVAVKVGE
Ga0335020_0003232_3482_3646	F017995	GGA	MSKMKQYIEIIAANCDECGGAGFVFFGDESNYDVSPCDCIADLSDELNVDWVNN
Ga0335020_0003232_5546_5770	F002245	AGG	MNNLMKVPHTIVFEAIIDLDKIPANLLPALIALDKSSIEKMCQEATLHALAESNVLKTANEFNTWAEVTIVGGN
Ga0335020_0003232_7220_7447	F005741	AGGA	MKNRFRIEIYDANKANDLTLYSEQGVDREYLNELVFSNLRRFSGRVNAYVFDNQKKKKVTAMFLDESIANKFQTI
Ga0335020_0003232_9073_9570	F000714	N/A	VETATIQPNNQTKEEKMETTENAIPDTYNPNLLVTYKHIRGYSDAEYVTEKVVNLEWELHNGRESQKRNGLFSSKIDTVKDIITEAYGDSEDQETLRAIAEALDIELTRTIEWSATIEVSGTLELDLLADYDTDVEQMIYDNLQVDSQDGQIEVIDTEVTNVREH
Ga0335020_0003232_9570_9782	F000311	GAG	MYFELTAPDRLSMEMAYWDAQMIGLDPMALSPLTFNIGTGSIEKVSKIRDKHNLIESYVSDQEPTGYTGR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335020_0003232

Overview

Ecosystem & Geography

Associated Families

Sequences