Scaffold Ga0335020_0003198

Overview

Basic Information

• Taxon OID: 3300034082
• Scaffold ID: Ga0335020_0003198
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10953
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (84.21%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003379	Metagenome / Metatranscriptome	490	Y
F092052	Metagenome / Metatranscriptome	107	Y
F093318	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335020_0003198_2927_3130	F092052	GGCGG	MLDECKNGQCTCEQEENFFHVKVLPQNSANLSAAGEETLSSYEFESNSLLEKDSMGREKFWEDMGRP
Ga0335020_0003198_3120_3329	F093318	AGTAGG	MQIQYVSKYIALSKEGLFPELNCPMDQGPLFPNLDNEDIAFLYCLSCDYKKVLGVKDYENIVRAVENAG
Ga0335020_0003198_878_1024	F003379	AGGA	MKKLSAFVMLIATAILSGVALSKFLNWAGQQEDFFDFDLNEDIDNEQF