Scaffold Ga0335020_0003145

Overview

Basic Information

• Taxon OID: 3300034082
• Scaffold ID: Ga0335020_0003145
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11043
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (16.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041193	Metagenome	160	N
F048308	Metagenome	148	N
F052587	Metagenome / Metatranscriptome	142	N
F052596	Metagenome	142	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335020_0003145_368_577	F048308	N/A	MPTNEPFIKKSMMYIELDIDQLNRLQMFNDRLKLHIDNLPRNSTGKRSRYFEQVKVMELFIQQNIKKFI
Ga0335020_0003145_8201_8485	F052596	N/A	MNYEKFKQIIDLQIAHNKRVDELYALKIDIVEFFNELGRANELLWTEVLTENGDYHLCYYLYEMNGMYGTPDLNEEYKDIKELYDYLIENKGFK
Ga0335020_0003145_8797_9162	F041193	N/A	LTAYSQSLLINNKDTLICFSSDKAKFLAKQYHKAEAYYLSDSLCQQQLILKTNQVNLYKKNEDKLQSIIGNQVTIIKFKDEENKSLTIQMKGLNLEVKKQKRLKGISIIFGVSCLVFALV
Ga0335020_0003145_9128_9493	F052587	N/A	VLINIPDKFVMFNKSIILCIITLCVHLLIVWFLYSPYNELGIIKNFRNEIDSLNKINDSLYSDIKNNKLIIDKYTQELNVLENKKQTVIIKYKTKVNEIDTLNHNNLVAEFDSIFAKFTN