NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335020_0003001

Scaffold Ga0335020_0003001


Overview

Basic Information
Taxon OID3300034082 Open in IMG/M
Scaffold IDGa0335020_0003001 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11354
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (68.75%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032097Metagenome181Y
F032881Metagenome / Metatranscriptome179Y
F051925Metagenome143Y
F078715Metagenome116N
F098314Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0335020_0003001_2965_3156F098314GGAGGMNKWIKDKIRETLNQTFTLLGMFIAWVVLDGSAKTIVAWAIVWAVFVWLFSMSFREGGQNDKE
Ga0335020_0003001_346_534F032881GGAMANTLELLVQELQNRIGQITSQYETQMAILKVQANEALQEKDEEIQQLKNGKLHIEPNKKDK
Ga0335020_0003001_4723_5226F078715N/AMHKKFLASIFSVLLVFAQATPASASDSIRYKTEKNQTIKKGKWTTINFNGKTSIQGNGNRSLFCYQVVLNTKGKKKPKYVKVRMVRVGSGKNNATATNTYFFTSKPDKKFVASQCWTILTEHPIVLQVRISGGSKTYQTDISQFKMWTPGGDYPQDFSDFIPETTIN
Ga0335020_0003001_8207_8446F032097GGAGMEFELHHEKDAGPLVRWFATKMLNILHKVEKPLYDYADMYTAVWDDYEEDDLSVPYNQMGIFDSLDPLPQFNNLTDDLI
Ga0335020_0003001_9845_9997F051925AGGMVREFQYDFFAEEWSYECGACGTDLYAPTKKHMEGNLWIHTHSSDCLGGW
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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