Scaffold Ga0335020

Basic Information
Taxon OID	3300034082 Open in IMG/M
Scaffold ID	Ga0335020_0002541 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034082 Open in IMG/M

Scaffold ID

Ga0335020_0002541 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	12406
Total Scaffold Genes	29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (10.34%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

12406

Total Scaffold Genes

29 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (10.34%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041191	Metagenome	160	Y
F044325	Metagenome	154	Y
F049410	Metagenome	146	N
F062749	Metagenome	130	Y
F068425	Metagenome	124	Y
F102493	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335020_0002541_3163_3759	F068425	N/A	MGVLVANNNNMKPHHQIITFAVLCLLLIIGLNYCAKDKPKPIPFDYKTEAELIKKQFGIEQAILLNQLEAVNRRLQTANNAKDSIRKREISLTNTNIALMKKLRDRLPKECDTVFVLCDEIINVKDSSYAALFTAFQLCADASTIKDSLIVGYKAENLTDSLLLKVSKQETKQQRRGKVAAWCVGGAMFILWLFVGLK
Ga0335020_0002541_4023_4208	F049410	GGA	MTRGTRYTNGKEVITFVKIDFIVIGGRKIDHVYFRRKDKNDLIMPLLEWNIKGKFEWLIT
Ga0335020_0002541_4631_4975	F041191	N/A	VQKVIGFSRGWHHWNSIRLGIRKEENYCVLYFYAYIKGQRIIQRLGRYSIGELVKVRLHWGYYIECKANDGYAFRVAPKCSFPIGYLLYPYAEKDGTEGIKVPFDIEIINLKIS
Ga0335020_0002541_5044_5235	F062749	N/A	MKTKPSLILWALSALFMSFWAIKFAMTGVFFGNSEVLTFTLSFCASLTSAVCGAGFMQQWLKK
Ga0335020_0002541_5239_5412	F102493	N/A	MTTTLTLTLHFDYEDDDRENNIRGGWVLTDITNGNTPVYLSPKLEQLLNEELDPENF
Ga0335020_0002541_6400_6567	F044325	N/A	MKALIQKLLFGYRNNPHAYIPKGGAKLTYKGGNAEAIHSALVLMQYNIRNAERIN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335020_0002541

Overview

Ecosystem & Geography

Associated Families

Sequences