Scaffold Ga0335020_0001930

Overview

Basic Information

• Taxon OID: 3300034082
• Scaffold ID: Ga0335020_0001930
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14333
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (6.90%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008078	Metagenome / Metatranscriptome	339	Y
F014956	Metagenome / Metatranscriptome	258	Y
F031483	Metagenome	182	N
F041648	Metagenome / Metatranscriptome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335020_0001930_1042_1326	F014956	N/A	MPTNNRSKMINIQDFALNASLSICPSHIVEPLHLKKWWRERGVGEIEKYFWTGKKIKYDQEIDWKAISDHKKQMWYDSQNFQINMGHEYSKRQG
Ga0335020_0001930_12895_13122	F008078	N/A	MTPKEKAEELFTHYHNLIQSIGGELGQEILVSILAKQSALFTAREVMKEKWNIEVEGSEDEYYWWEEVEHEIESI
Ga0335020_0001930_1299_1649	F041648	N/A	MEALKTTLTDNALTRYYELRIKYLEGENERLRNEARADFLTVLDFWIYAQRIIEAYVIFHKESNHDHYLDMIKTILQNMESKEEKALDTGINKLRIEIIARCKIAIIKCQQITAAR
Ga0335020_0001930_609_1067	F031483	N/A	MNILKGKVKYTAGKVFEGQYGPSINAVITLDNGTEARVYGKADDTKLMALKKDDAVTIIHDGKSYKVAFDMLTANEIPEKVQTPTEGANVQQAANVPPKSNGKMTPEEITEKATLMTSVYADIFHQLQASGLEPAQAQPAAATIFIQIGKYF