Scaffold Ga0335020_0001386

Overview

Basic Information

• Taxon OID: 3300034082
• Scaffold ID: Ga0335020_0001386
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17066
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (71.11%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013086	Metagenome / Metatranscriptome	274	Y
F019830	Metagenome	227	Y
F049634	Metagenome	146	Y
F050374	Metagenome	145	N
F066582	Metagenome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335020_0001386_12120_12245	F049634	N/A	MIMRKYITNKFNSIFLPYEEGMIEWLNENYPHSKYVVVEVI
Ga0335020_0001386_12242_12439	F013086	GAG	MTERQLIGYIEREEGFYHLHEPPKGSIVTQAFILCKYCNGAIYHCMGPRYDAVCLTCYEKDPDLR
Ga0335020_0001386_13066_13302	F019830	GGAG	MSKRIGPITLDGETADRITLLNLKEYKSYLTKELSAWRKNPRLEDNPEGIWMHPEDVTGNIQAISALDLIIKHFGVEE
Ga0335020_0001386_3222_3398	F066582	GGA	MITSQYQRLEDGPIDSIDAAIFSGDMFHNRENIAAFRAMMARWERGLKECEEIIDGDV
Ga0335020_0001386_3385_3693	F050374	N/A	MEMCEMDYKFIGWNTTDGADKVWGAIYMEDRTIIRPKVLIFWGRRGKKLQTKIDREGWDLDNLIRAKTQKGYNQIDNRHLKTVYPEFQNDLEKTTMWALLKL