Scaffold Ga0335020_0001275

Overview

Basic Information

• Taxon OID: 3300034082
• Scaffold ID: Ga0335020_0001275
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17845
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 34 (79.07%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003965	Metagenome / Metatranscriptome	459	Y
F010302	Metagenome / Metatranscriptome	305	N
F011386	Metagenome / Metatranscriptome	291	Y
F024955	Metagenome	203	Y
F029439	Metagenome / Metatranscriptome	188	Y
F030063	Metagenome	186	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335020_0001275_12792_12971	F011386	GGCGG	MKVTITTMQGNTRNIDLMTKQQVLEFIELYRSTLFTNQRVKITCDLIGIDGYLQGTNVS
Ga0335020_0001275_12972_13184	F029439	AGG	MTTLNTITLEPSHAMASSNTGNPMVFRNTVGNYISRKAYLELLATKQGVVSHRYLSPNESRWVMSAKGGN
Ga0335020_0001275_13810_13992	F003965	AGGA	MNSNVIITVCKSHVPNKSAISEVVDTQFTFCEECENNIERWYNDTDPERLPMWTNWQVSK
Ga0335020_0001275_7114_7545	F030063	AGG	MPTVFDSDGKAAYVYNAADDTWYQVSGKTDISGTFEWTGLHTHLSSLTATDHFTAKKGTNNFLNPAARDASITSPVAGSVCLIRQDGSGNTINQLQFYSGSAWVAFIPTQTGNAGKTLQTDGIIASWQDSPDPTTTVFLHMGG
Ga0335020_0001275_7545_8024	F024955	GAGG	MAVENIGNLVPTKIPALIDDANIQDALKAYHYGSYDFDTAETDPEELLNPSIAYTINDLQDQIDTKAALEISARDISRATTTAPTAASFTAFSATIPDGYIWLDKDSSAGVGYFSATSVYTASAPSTNLANGLIWIKKGSSPLEMYVYNGDTSAFDRVI
Ga0335020_0001275_8060_8635	F010302	AGCAG	MVDVLLNTEDVVVLGPPQTIDVLVDIGPQGTRGTKFIVGSGEPNPQTSSGVLLGQTLILNDMYINVAPGANYGYLYQYVSQPGGNTWTQVLKISPAIYSAVETVSFTSGAGSITIPISNIVTVSGSPLTASNFSVQFQIEGANPIASSMEIPALAGAGTNLVINFDAVQYSSGSWSTLTGNKIVHLFISIV