Scaffold Ga0335020_0001033

Overview

Basic Information

• Taxon OID: 3300034082
• Scaffold ID: Ga0335020_0001033
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20162
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (86.21%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002501	Metagenome / Metatranscriptome	553	Y
F004006	Metagenome / Metatranscriptome	457	Y
F018177	Metagenome / Metatranscriptome	236	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335020_0001033_15189_15404	F004006	AGGA	MREDIEGLVTSINMNQVLVAILEEHGKLVVPTLRFLDVNVSNKELVIDYDETGPSFTFSLREKDGVESDSN
Ga0335020_0001033_16747_16935	F018177	GGAG	MPNINEFLGKPEKLFSPELEKMGGIKPCNKCDKDSEEYFWDAVSNTISWECPDGHKNSYVVG
Ga0335020_0001033_7494_7679	F002501	AGG	MWCGKCNGRVFVDRVFSQKLHMELFCIMCGKRWMCNKETSAFGKWLDKKETKNLKNYGIS