Scaffold Ga0335020_0000956

Overview

Basic Information

• Taxon OID: 3300034082
• Scaffold ID: Ga0335020_0000956
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21082
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (55.56%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021920	Metagenome / Metatranscriptome	216	Y
F038982	Metagenome	164	Y
F043765	Metagenome	155	Y
F085063	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335020_0000956_14505_14672	F038982	AGGA	MSKLSDTLQRALDKKKGIHHPENGDAPITDAKVKKIKTAAPINNKPPTRSAGRGR
Ga0335020_0000956_15055_15282	F085063	AGGA	MKPRIASRGPIIDTEECVRQAGGGRYDLVLIAAQRLRELKRIHREDTTRYITPVDALMEVEGGQVNLEDYLAKIK
Ga0335020_0000956_15291_15461	F021920	N/A	MNMAKPKQTASERDRTLSGQWTKSEKRAVASRQIMASKKHTHEIIKAFKQNQILNK
Ga0335020_0000956_9579_9863	F043765	GAGG	MNYYYELDTRTTRYKEQQWQLWCMPNCSPAEGGHMDFKVHDDFVAQSTRVWLENANGVYLIKPTWQAHRFRVDPREFTLIKLKSKNIYRAYDHD