Scaffold Ga0335020_0000857

Overview

Basic Information

• Taxon OID: 3300034082
• Scaffold ID: Ga0335020_0000857
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22378
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (72.73%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023109	Metagenome / Metatranscriptome	211	Y
F054875	Metagenome	139	Y
F073561	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335020_0000857_11967_12449	F054875	AGG	MTKFSSAFGDKYQANRKNLLIRSFELGGHTFKVRIPLVAESEEIYKKVSEPDDETIEKIYVQITASLRQFEATQAENFQFTDNDILVEGRSMREAAKNKAITEARITEFFKLLVPELEGASLDDLTYDDIEQEFPISVQMQIVEKIGEVISPSYREARGN
Ga0335020_0000857_3610_4095	F073561	GGA	MALFSKNVITQVSGFDNPLITGELVYNQRWYWNLTILDVAGAPVNLTTATITADIARRQISNLVDTRNGLSFDVANYTPPPTAINLTISNKVNAAGSFTLVIDDTTWGLINSDPQLKIDEQNPVCFTGKIKLAFAAASPTPAEDDIIFLMFLVRSDGVTVL
Ga0335020_0000857_7853_8299	F023109	GGA	MIRHATKYDIPRLLEIVEAYAYENPIKKLGDSCNHFPRYVEQLLFEIISGRGFIYIDSNLRGAIVAYKTSNIWSPKIKELNELLWWVEPEHRNGTVGGRLWKAFDERAQAMLKAGDVDFVCTSISAQGPLIDYTRRGYKPLGATFVRE