Scaffold Ga0335020_0000586

Overview

Basic Information

• Taxon OID: 3300034082
• Scaffold ID: Ga0335020_0000586
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27302
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (68.42%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018930	Metagenome	232	Y
F059007	Metagenome	134	N
F096654	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335020_0000586_14675_14980	F059007	AGG	MPVKVYYYTRDKEGFALPDETYESIEEDLFLWQHINNARKQAGVPRDRFFIINTSCSPRKKPTWINPDWPVVPFPKLKKTRLAFGRYVIEKVPEPVDPDYE
Ga0335020_0000586_16751_17188	F018930	GAGG	MTWYANSEGRYGANGAKGDLGEAIVAEYCKTNNILFEDKNDIKSQVVLKIDCIIDGVAIDVKSNYYMGTLCVELFNNKKQKAGWLYTTMAKQIYGVDVDTKSIYRYNIEDMIAYVSMNEHRVKKTKYDDAVLWAPVALDIIEKLQ
Ga0335020_0000586_6219_6410	F096654	AGGAG	VDTTEIINRMIDDIIDGNNTDAKAGFDSALSSKLTDALDVRKVEIAQSLYNQEEEDEPVPSEE