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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034082 Open in IMG/M |
| Scaffold ID | Ga0335020_0000515 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 29230 |
| Total Scaffold Genes | 80 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 48 (60.00%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F020690 | Metagenome / Metatranscriptome | 222 | N |
| F034459 | Metagenome | 174 | N |
| F048314 | Metagenome / Metatranscriptome | 148 | Y |
| F067420 | Metagenome / Metatranscriptome | 125 | N |
| F088289 | Metagenome | 109 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335020_0000515_19689_20174 | F020690 | AGGAG | MIKSTDKLVTKDIYMSLSAIYTHTKPAAVIASMIDRSLPEFRKQLDLPRDVKFRVAPIKAKNTNGYYSVEDKLAVIDCRLGWARALEVIAHELVHAEQYHTGKLKKKYVQRKGWLHHWNGTPGKKGTTYKAYRDQPWEQEAWNRQMYLAETVCRILEEKYP |
| Ga0335020_0000515_25547_25753 | F048314 | GAGG | MSGIKATIEKAAEMLSLGYTDHEIVRILRVPPSMAEDLIQSAEQWNDITYVPYTEKEVDDMAEYYGEE |
| Ga0335020_0000515_430_711 | F088289 | GAG | MIKIVKLITGEELIADVTGSEILSLSKPCVIQMVPSRQNPEQPMMGMFPYAAFTEDHSIEVDRAKIVWSAKPVKELYNQYNSAFGSGIQIAGL |
| Ga0335020_0000515_708_884 | F067420 | GAG | MNILSLIPVTRKNWVIQASVFDDQILVFFHNPLTLAYFFKIFYNEECAYEFIEKIILT |
| Ga0335020_0000515_7192_7860 | F034459 | N/A | MNIALIFAGISFGHKSERDFNHCFPNIDRNLIQPLRKEHSVYNYVMTYDNDRMDEVTKLLNPKRLASIPFEGSRQNPTRKTAITLIGDDDSIDFYIMSRFDVHYNKSLKDFNIDWDKFNFTSPEGNGYWEREKWVGDTFYAWPKRLHEEVKIAYNELMKYDPNHMHNFYNIVSSIIGTENIHFMSEEPQLSGHLLTSICTRDYTDRLRGKIPINEEILAKFP |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |