Scaffold Ga0335020_0000502

Overview

Basic Information

• Taxon OID: 3300034082
• Scaffold ID: Ga0335020_0000502
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29635
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (15.91%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002018	Metagenome / Metatranscriptome	603	Y
F030696	Metagenome	184	Y
F040591	Metagenome / Metatranscriptome	161	Y
F088520	Metagenome	109	N
F097333	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335020_0000502_15742_16059	F088520	N/A	MKNMANKFWFAEQSSNASANTIIVDVYNRYDDEHIGTIELIYNYDKNNNNETWTIESAEWQQNLTLEQCDEAMQELTDNATENFHEFCYECYNYDPRDDEDWWFV
Ga0335020_0000502_17652_18074	F030696	N/A	MRNLVTILSLIVTIFATSCSSNYHLRKAIKKGYKCEEVGDTIRITTVDSFPIIRDNEIVYERFYTTKDTIIQYKTSYVPRTRYQERIIYRLKRDTIRQVQKVEVAKYKSQKEKPVFWVLILGFVMGMGTMYLFRYSKTQL
Ga0335020_0000502_25727_26176	F002018	N/A	VISYQALINEIIGFYDAHLQVKKVGSDFKEQLFNFATKDEKYPIVYIVPVDAIPTDNTNDFTLEIYCFDIIQKDRANINVILSDCHQILMDLYLNYTFSLDDRDFDVVGFPSLIPLNNDLLDYAAGWLMNITFTMDSWTDCQIPKQIVD
Ga0335020_0000502_5066_5437	F097333	N/A	MAIYNQSWLHTILHDLNGSVVNESLWQSICFHYGITATVNGSWLQALCEFFDVNHDLGEGWIQSLAEDFGATAPVNGSWIQALAMEIQANADLIDLLIARINAEGGVLEAEPCLELTLNQFDI
Ga0335020_0000502_7452_7760	F040591	N/A	MKIKTEFQGKTIIKRTSLGNKTIIVDNIDVSKYRYYVTIGLGYLFEKEAETATVPEPIRYEGIEADEQVEAPAVEPKPKRKRPVNAVAKKESKRNRNNDTAI