NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335020_0000423

Scaffold Ga0335020_0000423


Overview

Basic Information
Taxon OID3300034082 Open in IMG/M
Scaffold IDGa0335020_0000423 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)32942
Total Scaffold Genes57 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (12.28%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families6

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008546Metagenome / Metatranscriptome331Y
F012345Metagenome281Y
F015976Metagenome / Metatranscriptome250Y
F024267Metagenome / Metatranscriptome206Y
F029371Metagenome / Metatranscriptome188Y
F059779Metagenome / Metatranscriptome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0335020_0000423_18_278F008546N/AMKFKHKLILVFFTAIILEANSIAGFRFLMDKNWMGMVLMVFVNPLLCLPMNHYNIEAKTFKERLFIALTFAFGFAVGVGTIRPFFL
Ga0335020_0000423_23320_23760F015976N/AMKKLSTYSLILSLILAIFATGCSANYYLRRAIKKGFSVGESADTIRISTIDSIPYVLRDSIYWEKVIVQKDTIVRYKRLEVPKTRFETRIEYKLKRDTLRMIEKVEVVKYKTEKHKNRKPNLWLFIIGFVAGFVAKYLMKFAKYTL
Ga0335020_0000423_25976_26122F012345N/AMRFKLTYKIGLAIVQEWIFTSKGLAYWKKRDLIETGRFNDGKFLITPI
Ga0335020_0000423_28514_28816F059779N/AMDLGLLKIKTNANLWTIQQRIKSSREQILKTRPDATDYIRGAEQSEEELLEAIAFLTNLYEHAVSISRENTILATRNMELQRQKHELENQIKFNQIENEL
Ga0335020_0000423_28813_29067F029371N/AMIKEQKLVALCAVLPVLADFIEDLNDNGVFRQTLKNKATMLMKEIEKVDRAVLRIDEANAEQIWNDQIELQQSFRNWIEETIKL
Ga0335020_0000423_518_679F024267N/AMKIEITHYGHKASYEFEHEDVTLEDLLYHLDKLLKLTGYTFDGELEISKFEEE

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