Scaffold Ga0335020_0000423

Overview

Basic Information

• Taxon OID: 3300034082
• Scaffold ID: Ga0335020_0000423
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 32942
• Total Scaffold Genes: 57
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (12.28%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008546	Metagenome / Metatranscriptome	331	Y
F012345	Metagenome	281	Y
F015976	Metagenome / Metatranscriptome	250	Y
F024267	Metagenome / Metatranscriptome	206	Y
F029371	Metagenome / Metatranscriptome	188	Y
F059779	Metagenome / Metatranscriptome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335020_0000423_18_278	F008546	N/A	MKFKHKLILVFFTAIILEANSIAGFRFLMDKNWMGMVLMVFVNPLLCLPMNHYNIEAKTFKERLFIALTFAFGFAVGVGTIRPFFL
Ga0335020_0000423_23320_23760	F015976	N/A	MKKLSTYSLILSLILAIFATGCSANYYLRRAIKKGFSVGESADTIRISTIDSIPYVLRDSIYWEKVIVQKDTIVRYKRLEVPKTRFETRIEYKLKRDTLRMIEKVEVVKYKTEKHKNRKPNLWLFIIGFVAGFVAKYLMKFAKYTL
Ga0335020_0000423_25976_26122	F012345	N/A	MRFKLTYKIGLAIVQEWIFTSKGLAYWKKRDLIETGRFNDGKFLITPI
Ga0335020_0000423_28514_28816	F059779	N/A	MDLGLLKIKTNANLWTIQQRIKSSREQILKTRPDATDYIRGAEQSEEELLEAIAFLTNLYEHAVSISRENTILATRNMELQRQKHELENQIKFNQIENEL
Ga0335020_0000423_28813_29067	F029371	N/A	MIKEQKLVALCAVLPVLADFIEDLNDNGVFRQTLKNKATMLMKEIEKVDRAVLRIDEANAEQIWNDQIELQQSFRNWIEETIKL
Ga0335020_0000423_518_679	F024267	N/A	MKIEITHYGHKASYEFEHEDVTLEDLLYHLDKLLKLTGYTFDGELEISKFEEE