Basic Information | |
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Taxon OID | 3300034082 Open in IMG/M |
Scaffold ID | Ga0335020_0000423 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 32942 |
Total Scaffold Genes | 57 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (12.28%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → Viruses | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F008546 | Metagenome / Metatranscriptome | 331 | Y |
F012345 | Metagenome | 281 | Y |
F015976 | Metagenome / Metatranscriptome | 250 | Y |
F024267 | Metagenome / Metatranscriptome | 206 | Y |
F029371 | Metagenome / Metatranscriptome | 188 | Y |
F059779 | Metagenome / Metatranscriptome | 133 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0335020_0000423_18_278 | F008546 | N/A | MKFKHKLILVFFTAIILEANSIAGFRFLMDKNWMGMVLMVFVNPLLCLPMNHYNIEAKTFKERLFIALTFAFGFAVGVGTIRPFFL |
Ga0335020_0000423_23320_23760 | F015976 | N/A | MKKLSTYSLILSLILAIFATGCSANYYLRRAIKKGFSVGESADTIRISTIDSIPYVLRDSIYWEKVIVQKDTIVRYKRLEVPKTRFETRIEYKLKRDTLRMIEKVEVVKYKTEKHKNRKPNLWLFIIGFVAGFVAKYLMKFAKYTL |
Ga0335020_0000423_25976_26122 | F012345 | N/A | MRFKLTYKIGLAIVQEWIFTSKGLAYWKKRDLIETGRFNDGKFLITPI |
Ga0335020_0000423_28514_28816 | F059779 | N/A | MDLGLLKIKTNANLWTIQQRIKSSREQILKTRPDATDYIRGAEQSEEELLEAIAFLTNLYEHAVSISRENTILATRNMELQRQKHELENQIKFNQIENEL |
Ga0335020_0000423_28813_29067 | F029371 | N/A | MIKEQKLVALCAVLPVLADFIEDLNDNGVFRQTLKNKATMLMKEIEKVDRAVLRIDEANAEQIWNDQIELQQSFRNWIEETIKL |
Ga0335020_0000423_518_679 | F024267 | N/A | MKIEITHYGHKASYEFEHEDVTLEDLLYHLDKLLKLTGYTFDGELEISKFEEE |
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