Scaffold Ga0335020_0000422

Overview

Basic Information

• Taxon OID: 3300034082
• Scaffold ID: Ga0335020_0000422
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33005
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 38 (73.08%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002977	Metagenome / Metatranscriptome	516	Y
F003080	Metagenome / Metatranscriptome	508	Y
F043407	Metagenome / Metatranscriptome	156	Y
F073563	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335020_0000422_12238_12456	F003080	AGGA	MTTAKDLTDHIIYRAKNLKEFVVEREWESIPTGIVRFNIQHTQGHLARLFVPALTQTEAEEMVDEWFEEDVE
Ga0335020_0000422_12453_12626	F073563	GAGG	MNPKYLYTIKWTQPYATYRMRPYLRHLRNEYETQIEARLDRGEFDDAKTVIERIMSL
Ga0335020_0000422_12937_13281	F002977	GGAG	MKAQIPAEGIMKTNDWGDSRVYRIACNCGDEDHNHNMWVEADDSDIVVTIYTTGKTNWWSKKRWYHIWTLLTKGYIDTESAVHLTKQQALNYASVLQLAIGDVEEFRKEKNVKN
Ga0335020_0000422_7946_8371	F043407	GGA	MTTTLKNVKTVNTTSPGYGAVPPGGIGVSPLTIGQVYTTSGTAGQFLTSGSNGTSRANSNDTVLKVNQTNPPSIDVRGKMILNGVDLEERLDTIEKVLQIPERDVILEKKHPKLKKLYDEYITALGKYRTFEAIKGEDNVA