Scaffold Ga0335020_0000378

Overview

Basic Information

• Taxon OID: 3300034082
• Scaffold ID: Ga0335020_0000378
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34908
• Total Scaffold Genes: 59
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 44 (74.58%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009516	Metagenome	316	Y
F015592	Metagenome / Metatranscriptome	253	Y
F029429	Metagenome / Metatranscriptome	188	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335020_0000378_21005_21235	F029429	N/A	MVWRSSMTPAKLKLARVAMGYSVTEMADALRLSPDNGATSIRKMESGKVRISGPIMVAVDAMLKGYDPFGDDYDAE
Ga0335020_0000378_28686_28865	F009516	GAG	MTYPMGRMVIGDVETMPATERGCAKRTSRNVSQYGIRNGKAFKCRTDVVKGLTFITRLG
Ga0335020_0000378_30766_30978	F015592	N/A	MKFLTLLLGILDKLLGAWAESRWKQQGRQETIKETNDAINEQIALGEAAIITPDPERTERLRDRFDRSRK