Scaffold Ga0335020_0000316

Overview

Basic Information

• Taxon OID: 3300034082
• Scaffold ID: Ga0335020_0000316
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 38028
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (78.12%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000258	Metagenome / Metatranscriptome	1443	Y
F001106	Metagenome / Metatranscriptome	776	Y
F035307	Metagenome	172	Y
F056615	Metagenome / Metatranscriptome	137	Y
F060898	Metagenome / Metatranscriptome	132	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335020_0000316_21800_22207	F001106	AGGAG	MSFETLKVAELRKVAEDFAVDTDGLKNKADIVAALAEEGVTWSVYQKTIKDIEKAEDEFSEEAEEILPRFNPNAQPENTVLVRMTRENYRYDIIGFTFTKEHPFVAMTEDDAQEIFDKEEGFRLATPKEVQEYYA
Ga0335020_0000316_23198_23626	F056615	N/A	MYDLVDSVMSMFMDVYKPFDLQDEDTGSIKKDWQYDRTVPCSAKGIISNSSSSRTGDRQIMSNKYTNDQILQIRTSEKITLREKITNIRDSEGNVIWEELNFPTNTPTVFELMGTTPMTDPLGGVIGYNSTVKRSESQTIGQ
Ga0335020_0000316_23667_24398	F035307	N/A	MAGTRGTVLKDSTVAQISAAVYYQAQVVSKITTNKQFQAKFQSVIFKQLDQDFGLYLDSQARMNPKSLHHMYEWKRTGNAGSRLFKLNAMEATGLSFKISSVFLPSKSSVPNNFSKKRHVFTNKASIMEAGMPLTISPRSAERLVFETSTGVVYMPKGASVTVTKPGGGKATGRFQIAYARFFTGNLVNLSIKKSGFQQLFNSSLTKAMKLPSDVRKVKYSFTPNTLNMQAESAIAAAFGGAL
Ga0335020_0000316_24395_24907	F000258	GGAGG	MTIDYKADIMIDLRKYLWDQLEQNNIFTSTDYYSDNVGQEIVPIIPVQQSPEMNQFLSGKKHIVYDKIGMSYEDNWAICCEQILFTIYSTDVSEINEIRNMMTDLFRRMDESARDTNRFSGISQKFKFFSIFIADISPTAPSEELAGFLSSDVILEVKYARHTDIAGRFL
Ga0335020_0000316_26230_26487	F060898	AGAAG	MPELIQTLKSFKKQKSEDRKFTASLKGIELDIDEDEEVQEGKTFEDIQRKALGINASGDDILSLQGSLAANAGFGIGAGLGYSKE