NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335020_0000306

Scaffold Ga0335020_0000306


Overview

Basic Information
Taxon OID3300034082 Open in IMG/M
Scaffold IDGa0335020_0000306 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)38735
Total Scaffold Genes55 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (18.18%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021773Metagenome / Metatranscriptome217Y
F093855Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0335020_0000306_16884_17621F093855N/AMKKIKGFKAFEGLEGGEQLIYDQINTMIEANQFLKGKVVADKETVFDAGDFILLLGDLTHITDAHVDETIPGSKFDKGIDLKKAIISLVSTNKPTEMTKGFGPNESKVSTPDEAEKFKWLGLDSKVPVGVDNIYKSEPNNEEFKSMNVYSYKDSRGNEFKIKVKEGEGEKTTFLSFIGAKLGKVGEKTVLSVMTAFPGQNGAEVANRNDFEKLGYYFTTTNKEVIENSVGQVAEGFKHLRKFNNF
Ga0335020_0000306_3985_5442F021773N/AMKWIRNYKLFKEAIGTQVEAQVEKQVKPVYTNKNLIHEICVSMVLLNNSFLDNILDRGLKARYSENSEIFITDLKNLVLAKNRLNLGRFEGDTCVDDGDLGKINGLFEDSDFNIEKDWDKLVNARITARNIIDKLIPDAKLESDEIKAIYWIGPNKDKEHNEDIVIETKDGKQYSLFLNKSLSTQKTASFNTFADDLIGADIERLYGEEYMPRWSKLTQEWVKLIYENSNKNIQQYIEKFIDPKRIETMGYFEYFDIRHQDPRFKHLGEFIEEFDKNILKFSDLLNEIWKQRENCFMDVQRVEKEWYETKIVILNSKILENLLTTSLKTNFADDIQKIEGDNYKLSGGTVKMKLFKTLVEKLGCLERPTYFLGNNGNQFNMAPSREFFRKYYDEINLKFDYHVNFEVSEEEENNDFRVKIGLDLDEERLIDMTIFIKFSGSELSGKLSAKYKYELADNFNYLIAKKESGQSEVQTDDFDEEDIEE
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