Scaffold Ga0335020_0000144

Overview

Basic Information

• Taxon OID: 3300034082
• Scaffold ID: Ga0335020_0000144
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 55714
• Total Scaffold Genes: 67
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 57 (85.07%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001360	Metagenome / Metatranscriptome	714	Y
F097447	Metagenome / Metatranscriptome	104	Y
F098749	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335020_0000144_12420_13196	F001360	AGGAG	MSLAKFRKVHSKTGSGRFVVSEGIAPAAYLLPHPGLPTWYYDSEDDRFEIVIPKGTILSVIADANGDARIVPANGTGSSKVWGDDMSNTAWDPTAGATPAYSSGATDTVTVPARSIPIGCAQYDLYRPFDKGTSQGAGFITHGYVEYPMVSGINNDVTVGSVVRSDVMGRPVLAAATDFLDSSSVYSYLQVGKVVEVEKFATNFDDGLLSYMQLPSDPGALKTVYELTKAGPNNGKLGIRSNLDVTNVIGAFRVNLTL
Ga0335020_0000144_14917_15696	F098749	N/A	MKLLIGTPMYKRSWILPHWIRCLINQSVNFKEIGFVFEVSPDDKETIASLEAWKRFDKNIPYFEIKVREDIPHFEHSNNGRQWNISKYVNMVSLRNSLLQTVRDIQPDYYFSLDSDILLTNPNTIELLIAHIKAGADAVNPLMFMTPIGTLYPSVMDWRQDDTSKAYRKEKYELGTYFQSDVIMAAKMMSKDVYNNISYDVHQQGEDVGWSLACKKENFKLYCASYIYAPHIMSEVFYQSFLQNGDNRYESLSDNYAKV
Ga0335020_0000144_1861_3135	F097447	GGAGG	MAIPGVTTLIRDRFYSVSRQDAPVGPRIVTIAKRSTADGTGGVPDLDIVRVSNEADAITAFGNGSDAHRAFVELVTAGAERIFVVPLPSDTIFDHSLCTVTSSTFGGSVFDAAFVAAESAVPDIIIPWGRGSDPNDWSLNATATPSDDREFGFHADNNTAYATNWAYKVAVKAKEISESTNPCIAVMGVKPFLVSQAEGGAATYERMTPSQIATKINLSGLPDRDSGDAWKTVGPYVTIIATEIKPVNYSSGTTQFGYSNGAAFLAASMSRLPSYSSVVNKPLYNVEALRYAPTRTQQQALSTKGINTVVLNFNKVAVFGEGLTFGQSTSDYTRLSTKRIVDEASLVIRQVCQKFIGEPSNIQVRNAMETAITSGLRGMQLMGALLGSDFTVSYVPNQNKAIVDLVLTPAFELKTIEVQVAINL