Basic Information | |
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Taxon OID | 3300034082 Open in IMG/M |
Scaffold ID | Ga0335020_0000107 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 64418 |
Total Scaffold Genes | 132 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 20 (15.15%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F009960 | Metagenome | 310 | Y |
F015599 | Metagenome / Metatranscriptome | 253 | Y |
F042325 | Metagenome | 158 | Y |
F097324 | Metagenome | 104 | N |
F103248 | Metagenome / Metatranscriptome | 101 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0335020_0000107_32549_33235 | F097324 | N/A | MSINRTKTFIATIPMKSEEQVIEIKKVLEQIFGWVVLKGRHNNRKSVVTNWSVGKQNDVPWRKATYIDIYLHPKNPNYNSSKGIHRQNMKLNDNNVVIARMLGNMKLGLADGYYNTIQGKGSNVYQTIMNLYYQNKQKAVVTNTPKVHPRSNQPYGQITKQIWQFMNNRFDASFTELKTYYDVDIRGNKTILNGGSFIHHHQSLTKHSAKRGWYLAKQLNGKYALRGC |
Ga0335020_0000107_36326_36655 | F015599 | N/A | MKLTIKNFEKLFRKQWDDKNYIEDIDERRDEYRINVWRGNMRHIIILNRRPVELNPSAISDGYYTIGKWSNEAYCVRYPYWIKHEDIVNINSLMNKLKLLTDEWTPKLL |
Ga0335020_0000107_60520_60831 | F103248 | AGG | MLKIQNIDKIINITSPLPYKWHIIKATEAVDTYKDVYGFAVSINGKIQNIFYLNRESQYVSGRNEPVYRLYKDFDQTKINRWLSLHQISPYFIKQAIDKMLNE |
Ga0335020_0000107_60833_61156 | F042325 | N/A | MLKIGNIQKIEGTKIETVHAHWVVMSIEELKYDYNIKVRFDYGKSFGVKHPKYIKFKILRYNEFDSTANEWRMYNDQNSNCVTLTKGLLDFKMFPGMLGGQLDSFSK |
Ga0335020_0000107_62021_62341 | F009960 | GAG | MLILKNIHKINGYSLNVKGKGWYFKGWDNTTSEVTHFSIREVSPPHLVRKNITLHKKGRIVFDNSQNKDCYVYGIEIDGLLFHYIKERLNTPEKFRNEIEQILNAI |
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