NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335020_0000107

Scaffold Ga0335020_0000107


Overview

Basic Information
Taxon OID3300034082 Open in IMG/M
Scaffold IDGa0335020_0000107 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)64418
Total Scaffold Genes132 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (15.15%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009960Metagenome310Y
F015599Metagenome / Metatranscriptome253Y
F042325Metagenome158Y
F097324Metagenome104N
F103248Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0335020_0000107_32549_33235F097324N/AMSINRTKTFIATIPMKSEEQVIEIKKVLEQIFGWVVLKGRHNNRKSVVTNWSVGKQNDVPWRKATYIDIYLHPKNPNYNSSKGIHRQNMKLNDNNVVIARMLGNMKLGLADGYYNTIQGKGSNVYQTIMNLYYQNKQKAVVTNTPKVHPRSNQPYGQITKQIWQFMNNRFDASFTELKTYYDVDIRGNKTILNGGSFIHHHQSLTKHSAKRGWYLAKQLNGKYALRGC
Ga0335020_0000107_36326_36655F015599N/AMKLTIKNFEKLFRKQWDDKNYIEDIDERRDEYRINVWRGNMRHIIILNRRPVELNPSAISDGYYTIGKWSNEAYCVRYPYWIKHEDIVNINSLMNKLKLLTDEWTPKLL
Ga0335020_0000107_60520_60831F103248AGGMLKIQNIDKIINITSPLPYKWHIIKATEAVDTYKDVYGFAVSINGKIQNIFYLNRESQYVSGRNEPVYRLYKDFDQTKINRWLSLHQISPYFIKQAIDKMLNE
Ga0335020_0000107_60833_61156F042325N/AMLKIGNIQKIEGTKIETVHAHWVVMSIEELKYDYNIKVRFDYGKSFGVKHPKYIKFKILRYNEFDSTANEWRMYNDQNSNCVTLTKGLLDFKMFPGMLGGQLDSFSK
Ga0335020_0000107_62021_62341F009960GAGMLILKNIHKINGYSLNVKGKGWYFKGWDNTTSEVTHFSIREVSPPHLVRKNITLHKKGRIVFDNSQNKDCYVYGIEIDGLLFHYIKERLNTPEKFRNEIEQILNAI

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