Scaffold Ga0335020

Basic Information
Taxon OID	3300034082 Open in IMG/M
Scaffold ID	Ga0335020_0000103 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034082 Open in IMG/M

Scaffold ID

Ga0335020_0000103 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	65134
Total Scaffold Genes	98 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	81 (82.65%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

65134

Total Scaffold Genes

98 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

81 (82.65%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000220	Metagenome / Metatranscriptome	1544	Y
F007102	Metagenome / Metatranscriptome	357	N
F014133	Metagenome	265	Y
F018367	Metagenome / Metatranscriptome	235	Y
F074371	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335020_0000103_11335_11547	F014133	GAGG	MNHLKNTWEWLKDHYTMPTPAELVAEELVNAQRSKLRHQTAQEYHAAIVAYNVARIKRLEGLTAKQEVVE
Ga0335020_0000103_35653_35952	F074371	AGG	MAQKNVIAPRLPSAPDQYDRVYQDQLTNLLRLYFNQLDNNSPINISTQRNGANIIAALSVPPTPGTALPSLPTQADLANLRVGDVYYDTTASNVLKVKT
Ga0335020_0000103_39166_39783	F000220	AGG	VSEENLNANSTLDKVLGYVDSPFKLAAILIMGVVAFAGYFVYTNQDLLIGAYKESKKIPSIAEDRVEDASAHLFKTTNATIVAVFKVNPMFGTRILYRAYAKDGRDKTNDGLDVGLFTNNAANNADVVKLMANEIPCGEYRTAQSEMGIWYINKGVTYTCRISVPPEPGRFVGQITVGWETEPENLESARTMLSIAATMLSRSKQ
Ga0335020_0000103_39780_40253	F007102	GGAGG	MIDPISAFAIAQGAIKGIQAAIKMGKDVQGITNDVMKFFDAKEKVAKEAVKDPKKKYSSDTSQAMSTVMQLHELNKAEEELKWHFINQGHSQLWSQILLERNSIVQRRRTQEILDARAAKNRKQEIDEAITMGLCILVAAAIFFLVAWGIIAMKGKL
Ga0335020_0000103_40237_40407	F018367	AGG	MIDLASAQVPWPNTETKIVLVCRVVLPSEKYGANEFLDKDGRVCRWVVEVKNDRPN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335020_0000103

Overview

Ecosystem & Geography

Associated Families

Sequences