Scaffold Ga0335020_0000095

Overview

Basic Information

• Taxon OID: 3300034082
• Scaffold ID: Ga0335020_0000095
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 66580
• Total Scaffold Genes: 81
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 63 (77.78%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002653	Metagenome	539	Y
F028486	Metagenome	191	Y
F033000	Metagenome	178	Y
F053127	Metagenome	141	N
F061792	Metagenome	131	Y
F093270	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335020_0000095_2716_2997	F002653	AGGAGG	MTEMMSQEELEQRVGEMSDAEQAHFKLLIHKLVMCYGKGNAQAVVIMGRAEDSIAGVVTLNCDEMEASQLMLAANDFFGFLNVVDAPPKEKFN
Ga0335020_0000095_59498_60019	F033000	AGCAGG	MELTSKNCKDCRPKRKPVAKLSAKEIHNRVQTGDMNALMAKHLREKQAQDEHNKQAIASRRRWLKVWKAELAEALKPITYEIVSARNAWMYARRNGYVDKATFYHEYMGMLQLAKNRVEFNHALRPRRPASARWADYIDDAIFAKTREMWAVLPPVYKHSKIPLLITYRPDGE
Ga0335020_0000095_62048_62455	F028486	GGAG	MGYRSDVAYVIKFDDIETRDNFVTLMLAKNEPPITQAINDCEYRYNDDPIITFESESVKWYPDFDDVKAHHQLMKDAVEIYGEEKGGRYRFISVGEDGAEDFDESDDEGDLYDYITTVHAVQTSFPYIKSTETQE
Ga0335020_0000095_62461_63438	F061792	AGGAG	MAYICRNYQEAELLFEDRGPVRSSKWQPNERPLDPKPVAHHRLIQGSNSYGKYFDVKLYQTIMARFYEPKVEDGKRVERRLYMGHASQTSMQFMRHTLRVECGVNTIWDDEMLVDDRTIMPIYTKHFMVDEDNTPFSLDAVFVDGKLDTAESEHTKHYRLVADTDVRKYKAKVAAHFEPYIMLAQMRMPEFKAECNLDYKYGQAFGGEGYNRAYYMAIQEMWNDPEPRQQDIDVFFEMCQSAYNIIASKRGADQEGFQMKGSWYTRNTTTDHTVDDLKKPIEMVEFRRAILDRIQRYVGSNSLKKPEEVKQFPKHSEYPRSNIHT
Ga0335020_0000095_6433_6705	F053127	N/A	MERPHVRISASKTRAQTVRMRESQTTLLSDIPTTRLIDLWVARWGHDWVDLQDVVSDPFYKDAYDRMRREGELEVHFLTDRSKYVCRNPK
Ga0335020_0000095_804_1412	F093270	GGGGG	LEAKEILNNLAPRKGTLIMPDLQSALKNAIESWEPTPTGQQLKEKLMPKQSFPIQNNVTRVVFDYVKLHPGTTSAAASRDLVKHGFKESSVTALMAQFVRAGLAVRDNNHGYRVTVDEYTPMKASAKYAKKTAKVKPATTKDHKRPQATANDGIAALQPDATAVKRMVNTIVFGKPPEEVIKNMTVLQARELYDYLKRIFGG