Scaffold Ga0335020_0000008

Overview

Basic Information

• Taxon OID: 3300034082
• Scaffold ID: Ga0335020_0000008
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 187490
• Total Scaffold Genes: 241
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 175 (72.61%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001360	Metagenome / Metatranscriptome	714	Y
F007415	Metagenome / Metatranscriptome	351	Y
F007583	Metagenome / Metatranscriptome	348	Y
F067665	Metagenome / Metatranscriptome	125	Y
F085608	Metagenome / Metatranscriptome	111	Y
F105034	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335020_0000008_16140_16391	F007583	GGAG	MEMNSNQTNTSTGEGVANVRYGVYNQPAPVSGKTVGQVREQFSKLWGISSDAIAYKGKDKLDENYVIQSNDNVEFHRRAGEKG
Ga0335020_0000008_162306_163073	F001360	AGGAG	MSLAKFRKVGTKTGSGRFVVSEGIAPAAYLLPSQGLPTWYTDSEDDRFEIVIPKGTILSVVANASGDAMVVPANGTGSSQAWGDTISGWDPLAGATPTATPSGDTVTVGARSVPIGVAQYDLYRPFDKGTSQGAGFITHGYVEYPMVTGINADVTVGSLIRADHMGRPVKAATTNFLSGSDVYSYLQVGKVIEVEQFATNFDDGLLSYMQLPSDPGALKTVFELTRSGAYSGKLGIRSNLDVTNVIGAFRVNLTL
Ga0335020_0000008_181283_181693	F105034	GGA	MTNWESFINESGDFELPNFLYRTINDLMKQSLDMGTLLSNDQHKLRAYKEQTKKMFKARWFEIAKALEFFNIIDPCICSLSEKELYCDVCKGARFIISSTLTADEMKEVGFFINAADNLEIVQKLQKSLNEILMDR
Ga0335020_0000008_18143_18760	F067665	AGG	MSIEENVEEFLESLDSDNQDDKPKYTNTLYKKWFKSKSQSGFISIRPWFQGMKFSIDIGKTNASGKLESNTNCFVDAIDFAAYLKAITNGTAALNFPANERLGLATPEAYVSYGGTMTAAGQSISRIFKCQYWQSGDNVDTNAFIWKAGHFKARKSDSGAFIPDMKSPLSVDSIKVSRQDIVSISYLLDLSLASHVTNNTEWYDA
Ga0335020_0000008_44603_45223	F007415	N/A	LEFLAGKSKDLVSIFSRYYNSILKIKRRNKMARKYSYYPSFDGKGAQPGTKKLAELCGKRWKATNMGIYVARLMRNSHTEGKKIGDPGMEKYMSVHATGAAVDLGYSDRKVGVAMWDWFLANTEALGIEEIHDYAFDANATDKKPGYGRGYRCSRGEGAKGVKIFTATDNAGSFGGKWLHIELSPEMAKDAAKFEAAWRALPKPGA
Ga0335020_0000008_79784_80479	F085608	GGA	MSIQSIEALATDGALSFDIAEKYLTIYLGEADWKEKIGQLWTVQKKKLGDEQKAKDFIKKSVACACLSPMINKSAIPDEKHVLLFWVGGWPQFNERDWFDLFKSIAKKDLEIEINRKIVLQSGVFNQIDVSPLTRQAFNWIYERTEKESFSTEEKKQQALEKVKNLVRIYGGAIICNVFTNYPMNIEKVLNWRSGYFIEKEIYKVYSLEQILKIKKAELNKTNPKYITSIK