Scaffold Ga0335020_0000002

Overview

Basic Information

• Taxon OID: 3300034082
• Scaffold ID: Ga0335020_0000002
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 352243
• Total Scaffold Genes: 484
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 322 (66.53%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004865	Metagenome / Metatranscriptome	420	Y
F007689	Metagenome / Metatranscriptome	346	Y
F011368	Metagenome	291	Y
F054559	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335020_0000002_122187_122420	F004865	N/A	MIVTYVKKPSGKWDELTEFKNSLKQKHMQTAKVILDFKEKKCVINSLNREASYDDMLEFYKRQLGDQLTPYLPQESP
Ga0335020_0000002_308317_308586	F011368	N/A	MNYTLQHRDIAGHTLAPGDHCLVTEHNRLILARVIKLYPNSNFLQLQPLNSSAGGRRSKPSQKQIRRECYNVLRIADQEITMSILRGAI
Ga0335020_0000002_53045_53449	F054559	GAG	MKIGFSFGRCIRDIVNGEVSYDDVAWIISGTALRDIETVKFCIQDYMYRHDYLEGLDEEQCMEVGMRLYNEGKVFQPRLQDIRAFRIPEGAIWADLFPTNMANNHAAKTAWEAYRFMLHMTVQVPEDVKENWKG
Ga0335020_0000002_64092_64259	F007689	N/A	MSVWIQMKLYEATIRVDGKEFKDRVGANSAEEARMLLQQRHGPRAVPYVPHMIPS