Scaffold Ga0310130_0019280

Overview

Basic Information

• Taxon OID: 3300034073
• Scaffold ID: Ga0310130_0019280
• Source Dataset Name: Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2196
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.784
  • Long. (^o): -98.26
  • Depth (m): 2896

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002489	Metagenome / Metatranscriptome	554	Y
F021111	Metagenome / Metatranscriptome	220	Y
F076926	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310130_0019280_236_352	F021111	AGAAG	MTESKEPLKQIQTDGGIIIETDQMGREKFWEDLGRPND
Ga0310130_0019280_345_557	F002489	AGGA	MTEKEKSQNLEDNLDMVNYIMLHRIYDILTLIANKLVGPEDTSKLIEYHDQGFLLGPTPSYTPNETDENN
Ga0310130_0019280_64_276	F076926	GGAG	LKIQIVSKYLALAEEGLVPGISCPVDQGPLLPNLDLNDTIYLYCLSCNYKNSMGLEVYDRIERTVKANTN