Scaffold Ga0310130_0017927

Overview

Basic Information

• Taxon OID: 3300034073
• Scaffold ID: Ga0310130_0017927
• Source Dataset Name: Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2294
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.784
  • Long. (^o): -98.26
  • Depth (m): 2896

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014238	Metagenome	264	N
F018353	Metagenome	235	N
F028786	Metagenome / Metatranscriptome	190	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310130_0017927_1755_2294	F014238	N/A	DANLVNADIQTRLQTADIVNSVVIRYDDPVLEEAAQNDTSINNYGLLQEIRQTILAQQLDAQEQAVNFVNYRGTPRTSLEAVSVNLANDGITNTVRDDLLGVTMDTLLYLDNIPIGLIPEGYFEGFVEGWTWTLGRRNLELTMSVSNSIYSTLDVQWEDYNALIQWQNLDNATRWLDVI
Ga0310130_0017927_758_919	F028786	GAGG	MQSFNHKQFSLAAIAFLAAWQATDFALDYRAVLGAVVAASMGAMNPNAKAKTK
Ga0310130_0017927_77_376	F018353	AGG	MSKPKAKKQTIELPDVMAAELVRVINTAHEDGKLITGFVACLELFDGKKKTIKIVANQDMPQHSVFGIINFAAEKYQFTMSPDEDEDDDFYDPEWFDGQ