Scaffold Ga0310130_0016094

Overview

Basic Information

• Taxon OID: 3300034073
• Scaffold ID: Ga0310130_0016094
• Source Dataset Name: Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2460
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.784
  • Long. (^o): -98.26
  • Depth (m): 2896

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023346	Metagenome / Metatranscriptome	210	Y
F029753	Metagenome / Metatranscriptome	187	Y
F039627	Metagenome / Metatranscriptome	163	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310130_0016094_1_171	F029753	N/A	NEVSLSLFERGLKGRTLCWSERLRWCWQILRHGRPWSDFVILNEENQKQLKEFLSK
Ga0310130_0016094_1181_1690	F023346	N/A	MNNTISKNIILTYAKALRTIQKDQIDPYVELIEKELIKVYPELKDREDNALNWAYDILNATSNTEVVETLTRLDKIIEDERKEKWTCGYCGKNTYNDDVEYLFGTNHIGCVLEEDIKNREHSDPDYILDNRLRKISDIERKLDNYESELNKLHAELVRLRSDYHHEPTN
Ga0310130_0016094_2026_2277	F039627	N/A	MTASFYKTVYQRKFNELPRWKKLAIVEDSERNNWSGLLTDFVKDVIEEAEKEYANSRSTVANTPVEYVKESENKSKKTIKKKN