Scaffold Ga0310130_0012634

Overview

Basic Information

• Taxon OID: 3300034073
• Scaffold ID: Ga0310130_0012634
• Source Dataset Name: Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2878
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (40.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.784
  • Long. (^o): -98.26
  • Depth (m): 2896

Associated Families

Family	Category	Number of Sequences	3D Structure?
F052556	Metagenome / Metatranscriptome	142	N
F063632	Metagenome	129	N
F065720	Metagenome / Metatranscriptome	127	Y
F101045	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310130_0012634_1384_1644	F065720	AGGA	MSFLSDLIMKLLRWFYELSQKDSISQDAQKDEKLRQDLHARIDAYERELLIESDLRAQRAASEIGRVSKSPSVGFRFKRPESKIKE
Ga0310130_0012634_1807_2061	F063632	GAG	MKSAIEFVGNFFQNNGHLRGALYFSIAALTPMSAAFVEWASQDGPKNWYEVIALGLGSVISGLTAIRAYLDTHLSKTKDPNAKQ
Ga0310130_0012634_2268_2456	F052556	N/A	MIKLELTPEEANGVLQLIDIAIKAGGIANAKIGLPIFDKIMAAANASEIPQAPAQAELPLEK
Ga0310130_0012634_442_1092	F101045	AGG	LALSLLSGGVTLNVFTHLQDYTLINSAIENIPEDIKIRIWVRDNFDKTKLRRPCEVFFVPAINLSWIQKMRMCARLAREAQEAWFGYAHDDATISREDFNSMLEARKTAGDNIYWIVTNNPKHPEINADIYALINTKNYWAIGGHDEGFHIYYADIDFHIRQAHNGKSQLGVCTPSTTHIGSAVLKRLEGLEAELYKLQLKKDHAYFKLKHPSFDV