NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310130_0007722

Scaffold Ga0310130_0007722


Overview

Basic Information
Taxon OID3300034073 Open in IMG/M
Scaffold IDGa0310130_0007722 Open in IMG/M
Source Dataset NameFracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3979
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter baylyi(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Oklahoma
CoordinatesLat. (o)35.784Long. (o)-98.26Alt. (m)Depth (m)2896
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000645Metagenome / Metatranscriptome962Y
F004115Metagenome / Metatranscriptome452Y
F005878Metagenome / Metatranscriptome387Y
F099166Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0310130_0007722_1142_1729F000645AGGAGMSNYLDDYVSVQDRLKEFINAYPDYRIKTHVLEESLTSSCDVYIVKTELYRTEADSVAWTTGLSSEAKSKQYALELAETGSLGRALNLAGYFAKPAGATKKPIQTLNPKLAEFVKEQRPNDPEPIVWDVSDVAEKLGAEIVDEIPLCNHGPMILKSGTKEGKEYRGWVCPERDKSAQCPAKWMRIGSDGSWVFQK
Ga0310130_0007722_1738_2055F005878GAGMHPFKCGNCKKITAHREIRRYASEINEGQEVWLMECQNCFEMRLIEPVERVASKEDDITRCDQCGNYKMKAAQCRICRIAAGQERIKERYWTGGATLERFLDADI
Ga0310130_0007722_2354_2839F099166GGAMTIKDLSLKLAAISLLADQAKKLKDELRAELKVQMDELGADRVKAELGDEVVAYITTTKPKFKWVIKSDRKALEWFKAYYPSEVIETIRPSSLEAILDKFNYQDDVVIDPNGEVVDWLEGSLAEPYLTTKFHGEGRAILRDALIGLKRNELDVKEILELEG
Ga0310130_0007722_844_1158F004115GAGGMTLSLTRNTNKNQWCDYCKNRWGQLKDGTWHIRAQVPAIWKVQSETPNRKAQVRFYCQACADEVQNWVYRDGKETHTEFWTLKEQLQYAISDFAKQEKLNVELP
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