Scaffold Ga0310130

Basic Information
Taxon OID	3300034073 Open in IMG/M
Scaffold ID	Ga0310130_0006429 Open in IMG/M
Source Dataset Name	Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034073 Open in IMG/M

Scaffold ID

Ga0310130_0006429 Open in IMG/M

Source Dataset Name

Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4465
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (75.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

4465

Total Scaffold Genes

8 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (75.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	USA: Oklahoma
Coordinates	Lat. (^o)	35.784	Long. (^o)	-98.26	Alt. (m)	Depth (m)	2896
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Oklahoma

Coordinates

Lat. (^o)

35.784

Long. (^o)

-98.26

Alt. (m)

Depth (m)

2896

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001805	Metagenome / Metatranscriptome	631	Y
F012447	Metagenome	280	Y
F023328	Metagenome	210	N
F028786	Metagenome / Metatranscriptome	190	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310130_0006429_1427_2656	F023328	N/A	MTVYTPTYRVTIAGVVQTDDILTGGTITYGRNDFFEATQPSYCNIELLNKDGLSPVVELLDVVLIEVTDSTGAYVKLFTGEVSGVYNRFEGAGAAGKPNTLQIQAIGALGLLVKRTAGAVSYPEELDGARIQRILEETLFVAWEDLSNTQTWDDFTTETWATYGVQGIDTIDAGRYEVLARSAEIEQAFNLTDETQQSGLGYLYDTADFEIGYADAERRSENYTTNLIELDANLVNADIQTRLQTADIVNSVVIRYDDPVLEEAAQNDTSINNYGLLQEIRQTILAQQLDAQEQAVNFVNYRGTPRTSLEAVSVNLANDAMSNIVRDDLLGVTMDTLLYLDNIPTGLIPEGYFEGFVEGWTWTLGRRNLELTMSVSNSIYSTLDVQWEDYNALIQWQNLDNATRWLDVI
Ga0310130_0006429_3914_4381	F012447	GAG	MAKAIQLVKVDRDYNGLLRAFNKMDDIAKKDMQEIAGKLAERGANYAKGAANNAPYNVKQARAVAESIVIKAKDKAPSFSIGGKRPVGSSAFSAGYVIMGNEFGSKQYKQFPRRSGKGGKEGWWLYRAMSRFQPTIAQEWLKGYERIRDAWKAGL
Ga0310130_0006429_392_553	F028786	AGAAG	VRSFNHKQLSLAAIAFLAAWQATDFALDYRAVLGAVVAASMGAMNPNAKTKIK
Ga0310130_0006429_540_767	F001805	AGG	MTMAKTETIKIQDGNTVIELTGADKEAFIAQRKIDNAERGLLEAEYKAKQEARESAIKKLGEIAGLTKEELSAIL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0310130_0006429

Overview

Ecosystem & Geography

Associated Families

Sequences