Scaffold Ga0310130_0006200

Overview

Basic Information

• Taxon OID: 3300034073
• Scaffold ID: Ga0310130_0006200
• Source Dataset Name: Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4573
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (28.57%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.784
  • Long. (^o): -98.26
  • Depth (m): 2896

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001120	Metagenome / Metatranscriptome	772	Y
F001165	Metagenome / Metatranscriptome	760	Y
F001807	Metagenome / Metatranscriptome	631	Y
F007026	Metagenome	359	Y
F035274	Metagenome	172	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310130_0006200_2511_2786	F007026	N/A	MSYPEINWKKNEYHQLQEVVNLLKAIQEREGKRHQMDEHLTPHTADVVLEVISMLEDEIDYDPTPNEPGEPPITMNEMHTAAWKEHQAMHR
Ga0310130_0006200_2947_3156	F001165	N/A	MTESNLPRIPDSLDMQRLQAMQLVAKMKESAEKHGIGFIGGFIAPNGEKFVMTNMDDEDANALMPEDLK
Ga0310130_0006200_3427_3657	F001120	N/A	MNFNNSFANSKMTDKSPLNFDRTVAGFNITEHGIKSYSKSFQLGPFQLTLNARQSGVRGSLSLPGTGVSIPNIKII
Ga0310130_0006200_4073_4324	F001807	GGA	MTVLAIEHTSFTDTHVTVTAVVDEMRLLYRATRFEPEEWAPALCQATIELDPEEPIPLDEDGFCAYLDQLDPQWELVERDDLD
Ga0310130_0006200_571_843	F035274	N/A	MLTVGKEDLDKAIAMFKIDDYYISCKTSECYLHWVALTEQAREYIDAYFECLDVLIDGQWVDTYGSYEQGNPVSLPDQDYIACRYILETN