Scaffold Ga0310130_0005880

Overview

Basic Information

• Taxon OID: 3300034073
• Scaffold ID: Ga0310130_0005880
• Source Dataset Name: Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4732
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (30.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Leptobacterium → Leptobacterium flavescens (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.784
  • Long. (^o): -98.26
  • Depth (m): 2896

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048952	Metagenome / Metatranscriptome	147	N
F057319	Metagenome	136	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310130_0005880_2426_3094	F057319	N/A	MDLKQHQAKIEEISKGNYSQHSLLDNNGKQIIGANPYNKPSKLPDIIRFLKNMPEGQYIVRCSKGKNSQFDYPINTATQGTNAPAPNVSSSQASTDDLKTAERLGRLESENAFLRQQLTEAGERIQALEAEALEADWDDEADDILAEQAPSPKEQILEAIAPVIPALADKALALVDRFLNKPTAQPLSDRAPAPAAPVIDYERLAEMVSQKLMEAQEPEEIS
Ga0310130_0005880_3799_4323	F048952	GAGG	MTAPNKSDLGTLAAIGGVILFWPAIKSLINLTSATAQATANVLTPTDQLLAQAAPGIYAELMKRPPLPLPSGGMPSLRRFLTDQECAALANFIEENLGGTSSDWPAIREAFRGLTLSVADQRMIYAQFGLRREWWAITGGAKKNLFQWFRDNLSASELNVARQIWRSANIVPAL