Scaffold Ga0310130_0005130

Overview

Basic Information

• Taxon OID: 3300034073
• Scaffold ID: Ga0310130_0005130
• Source Dataset Name: Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5198
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (82.35%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.784
  • Long. (^o): -98.26
  • Depth (m): 2896

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F000311	Metagenome / Metatranscriptome	1326	Y
F000450	Metagenome / Metatranscriptome	1126	Y
F000714	Metagenome / Metatranscriptome	924	Y
F001019	Metagenome / Metatranscriptome	804	Y
F007470	Metagenome / Metatranscriptome	350	Y
F015988	Metagenome / Metatranscriptome	250	Y
F034924	Metagenome / Metatranscriptome	173	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310130_0005130_1_354	F000714	N/A	YTTSKVTSLEWDLHNGRQSQKNVSLLQSKINTAKDIILEAYEMSDDQETLQSIAEALGIELTRDIQFTATIEVSGTITLNLLEDYDLESEITDCLYVDANNGSIQIDDQEVCHVREA
Ga0310130_0005130_2911_3117	F015988	N/A	MEYMKIHLISLEQDLENISQEMELLDPESKACKELDYEYNHMAGQILTARHFLSVATDIMNSSNERYE
Ga0310130_0005130_3117_3395	F000263	AGG	MDGYMEDIGLPPHLQRMVNYDINGLDIMHGELKNLMLIWEKELEKAQEIEDESGEAMDSMERKYCEGFLDSLTALYNLTYQLSFAIGARNEA
Ga0310130_0005130_354_566	F000311	GGA	MYFELTAPDRLSMERAYWDAQITGLDPVAIAPLTFNIGTGSIEKVSRIRDKYNLRESYVSDYEPTGYTGR
Ga0310130_0005130_3834_4064	F001019	GGAGG	MSYAPSLEILEVAYEVSPGGTRTFEVYDKSEIEPVQIPIFETESLTEAVEFCYNLDKDFIVRTYAEWEMRELLADL
Ga0310130_0005130_4051_4251	F034924	GAGG	LPIYRVFGTKYQNYYTIVSAADEYEAAEIANSRPTIDWELVPIDDEIEATDVFLDDDTSEDLQLNI
Ga0310130_0005130_569_724	F007470	GGAG	MDYQDGFEDGVKFAREVITANIRLWAESEDEGQVYDDIADRIEFGTVDYDL
Ga0310130_0005130_925_1329	F000450	AGGCGG	MGDRANFGFVQPNGNTIVLYGHWAGHQMLARLAEAVFKARPRWNDPSYATRITISQMVADDWNSETGWGLHVNEIGDNEHKIAIVDFEQQTFSLHEEAPRNDLDNKVNGMSNEAIFTMDLSNFVEKYADVTLSV