Scaffold Ga0310130

Basic Information
Taxon OID	3300034073 Open in IMG/M
Scaffold ID	Ga0310130_0004975 Open in IMG/M
Source Dataset Name	Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034073 Open in IMG/M

Scaffold ID

Ga0310130_0004975 Open in IMG/M

Source Dataset Name

Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5295
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (81.82%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

5295

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (81.82%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	USA: Oklahoma
Coordinates	Lat. (^o)	35.784	Long. (^o)	-98.26	Alt. (m)	Depth (m)	2896
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Oklahoma

Coordinates

Lat. (^o)

35.784

Long. (^o)

-98.26

Alt. (m)

Depth (m)

2896

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001805	Metagenome / Metatranscriptome	631	Y
F018353	Metagenome	235	N
F023328	Metagenome	210	N
F028786	Metagenome / Metatranscriptome	190	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310130_0004975_1759_2988	F023328	N/A	MTVYTPTYRVTIAGVVQTDDILSGGTITYGRNDFFEATQPSYCNIELLNLDGASPVVELLDVVIIEVTNSAGAFVKLFTGEVSGVYNRFEGAGAAGTPNTLQIQAIGALGLLVKRTAGAVSYPEELDGARIQRILQETLFIAWEDLSNTQTWDDFTTETWDSYGIQGIDTIDAGRYEVLARTAEIDQAFNLTDETQQSGLGYLYDTTDFEIGYADAERRITNYSDNLIELDANLANADIQTRLQTADIVNSVVIQYDDPVLEEAAQNDTSINDYGLLQEIRRTILAQQLDAQEQAVNFVNFRGTPRTSLEEVSVNLANDAMTNTVRDDLLAVSMDTLLYVDNIPVGLISSGFFEGFVEGWTWSLGRRNLELTMSVSNSIYSTLDIQWENYPSLTQWQNLDNTTQWLDVI
Ga0310130_0004975_758_922	F028786	GAGG	MQSFNHKQLSLAAIAFLAAWQATDFALDYRAVLGAVVAASMGAMNPNAKKTKTK
Ga0310130_0004975_77_376	F018353	AGG	MSKPKAKKQTIELPDVMASELVRIINTAHEDGKLITGFVACLELFDGRKKTIKIVANQDMPQHSVFGIINFAAEKYQFTMSPEEDEDDDFYDPEWFDGQ
Ga0310130_0004975_909_1127	F001805	AGGAG	MATEKIIIGVDDQVIELKGADKEAFIADRDVRAQEALLLETEYKAKQKAREDAIKKLAEVAGLTEAELNAIL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0310130_0004975

Overview

Ecosystem & Geography

Associated Families

Sequences