NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310130_0004859

Scaffold Ga0310130_0004859


Overview

Basic Information
Taxon OID3300034073 Open in IMG/M
Scaffold IDGa0310130_0004859 Open in IMG/M
Source Dataset NameFracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5383
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Oklahoma
CoordinatesLat. (o)35.784Long. (o)-98.26Alt. (m)Depth (m)2896
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010247Metagenome / Metatranscriptome306Y
F013082Metagenome274Y
F019968Metagenome / Metatranscriptome226Y
F022646Metagenome213N

Sequences

Protein IDFamilyRBSSequence
Ga0310130_0004859_1539_1772F013082AGGAGMQTVQQEIDRLYLESKLNRYIVSNEASLYYDLCSVVDKTITLDEFYKLFPYHNPDINSDYWKQQHNRWKEIWKQDAV
Ga0310130_0004859_2_505F010247AGGAGMNVQGVVKYVYDNRLTKDGTPNKFPNFKFKVNDQEIVLWSAIKPSFLEKNKTVSVTCGASKKNGSLFVLSKEDKTPMIQELPTGANTKPDTSFNVDDFEADNFNTAVTTIEKEIADKPVSKAFNKDEYMFVMALLKSGIESGKIDVTKEEIDLKIKDYKFLFQINFHN
Ga0310130_0004859_2729_2896F019968N/AMRNTGVICSMSYHEMKLMTAVLSRILLDNEVRGEHTKKRITNLISKLNNMITKQC
Ga0310130_0004859_4207_4593F022646N/AMQIAKAKIIHSVKHQKFVASFPCVVCGNDTQVQCCHIRSIPKVGNVGKGIRDDRFCIPMCFTCHTQQHLIGELEFFEKYNINPILISMKIASISPCNKINQSKQEGAYNGKLDYRQHIRNNKKSSLQS
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