Scaffold Ga0310130_0004797

Overview

Basic Information

• Taxon OID: 3300034073
• Scaffold ID: Ga0310130_0004797
• Source Dataset Name: Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5439
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.784
  • Long. (^o): -98.26
  • Depth (m): 2896

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011389	Metagenome / Metatranscriptome	291	Y
F054621	Metagenome	139	N
F084137	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310130_0004797_3522_3884	F011389	AGG	MPVAYTDLFNEALDDLTATLQTVTGLQVINDPRNIVPPCAFIDAPSFEAFNYNIVKITFPVRLITLGPGNLDAQRSLMNMAAKVLGKNVAVTSGRPTIAIIGGSELAAYDLTIEMQAQTA
Ga0310130_0004797_3894_4085	F084137	AGGCGG	MYYIIKSARLGELGTEYELKPGINVNALLWGGLIVEVNPEQPDEVSTPAPKKGAKNKKATKED
Ga0310130_0004797_4920_5438	F054621	AGG	MAQPVLQVKGIQETLALLHKIDPSYRRKITTRIKRSGEIILNEARSMVAHYDNSKGNGAPLSGMVRGNLVRGRETSWRTDQVQKGYKIKVGVRPSRERYVDFNRGGYTEQVVFGAKPYRLMVVQSTDPAGVIYDHAGRNVSSLFVANLTKEEGQQPRVIDKAVTKNRDAVQQD