Scaffold Ga0310130_0004574

Overview

Basic Information

• Taxon OID: 3300034073
• Scaffold ID: Ga0310130_0004574
• Source Dataset Name: Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5603
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (86.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.784
  • Long. (^o): -98.26
  • Depth (m): 2896

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006300	Metagenome	376	Y
F011293	Metagenome	292	Y
F020893	Metagenome	221	Y
F049592	Metagenome	146	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310130_0004574_1884_2240	F011293	AGGA	MATNPDPGDAAYVAWQLTKNGDRMQQYGHPWDDYTMVRRLFSTLTNYKHNLTVQEAALFMVCVKLARLMKSLDVEKMHEDSLIDAIGYLNCLHMIDAKDQLKDAPKHIIGDMVVEWER
Ga0310130_0004574_3082_3357	F049592	GGAG	MARLEHPLVLVTWHDAHTIDNDEWHELADLTDEPCVVQSVGWLLSKRNARHLILGQSLTDDKGVDNVLFIPTKMVRKVVRLQIPHKRRKVR
Ga0310130_0004574_4505_4723	F020893	N/A	MQTEITVALISAVALIVAGVPAALVERARRENADDHAYVRKILTRVETKLDNHLEDHINGFTRRDKSENKQA
Ga0310130_0004574_5252_5428	F006300	GGTGG	MKWQHVLEDWAKAFVAGSVAVLITSGYDIEGALKAGLAAILPLIYAWANTKDARYGRK