Scaffold Ga0310130

Basic Information
Taxon OID	3300034073 Open in IMG/M
Scaffold ID	Ga0310130_0004322 Open in IMG/M
Source Dataset Name	Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034073 Open in IMG/M

Scaffold ID

Ga0310130_0004322 Open in IMG/M

Source Dataset Name

Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5811
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (35.29%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (28.57%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

5811

Total Scaffold Genes

17 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (35.29%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (28.57%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	USA: Oklahoma
Coordinates	Lat. (^o)	35.784	Long. (^o)	-98.26	Alt. (m)	Depth (m)	2896
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Oklahoma

Coordinates

Lat. (^o)

35.784

Long. (^o)

-98.26

Alt. (m)

Depth (m)

2896

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001338	Metagenome / Metatranscriptome	719	Y
F002038	Metagenome / Metatranscriptome	600	Y
F015597	Metagenome	253	Y
F040619	Metagenome / Metatranscriptome	161	N
F058813	Metagenome	134	N
F065732	Metagenome / Metatranscriptome	127	Y
F098917	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310130_0004322_13_207	F040619	N/A	VSAKAAIKSDRMKKLLNHYHEALSEDGATKISLQAYAAAGGWVGITYSYEARFEIAGSQVPRRV
Ga0310130_0004322_2401_2640	F015597	N/A	MSDPKPFDPFDPISAAMGALHGQNLLAAKDARIKQLEERLEGMREAGDQLWYCVRHAQRIDADELIEAIEDWQEARNHG
Ga0310130_0004322_2868_3107	F002038	GGAG	MADLPKGIEKIATTIRGQYALLLLLDGYPYVEMTARKHADFLSDLNAWKRKTYPSLSRSVVRFFTLAPTGEVKEITFTK
Ga0310130_0004322_3104_3460	F098917	GAG	MTNREYLRNILGQLAGEVAALRPTPEDSVTLAGSDLMQLQIAINEAATELERLDAENIEEAYHLKPVYDRIKAVIAHERVLRNQLDRVALAADNAIDLCNLLSAHVEEHGPTDDDANL
Ga0310130_0004322_4348_4788	F001338	N/A	MSTPNQDRQPLKSIETAGTYKLKLIKPAFDKIRAWEDGTVSCRLFFLDDQGNCLSKSFSSKWGKPLAMLVGKFSGKFTEEIRLDATPAEFLEYITPACGKTCLIGVEATPSGEYNGKPQFKYKLTYPKGSQKPVVNDLPGPDEVPY
Ga0310130_0004322_4946_5527	F058813	N/A	MSNMSAPTLVLISGFARAGKDTLATGILEWARRPSRKTNFADYLKDAANDYLLSLNLEGNFHNEEFKVRHRDFLVAAGKLARSLDVDIFAKNLAQFCPIRMSPDELAPETVVCSDLRYANEVAVCEDTLHDLGWRVRTIYVATAGVGPANQEELDSICEIREKHAFDLELTFAPNSRNTIMQEGRYIAKAWKL
Ga0310130_0004322_5515_5811	F065732	N/A	MEALDPDTVAWGKRIGISPERLAFLAACPKYTRTGRNDKPAYIKTENPNHHLQKLGDCWWLRIRRRKTNIVHNLGKDLETARKHRDEMLAAYDSGKPIP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0310130_0004322

Overview

Ecosystem & Geography

Associated Families

Sequences