Scaffold Ga0310130_0003902

Overview

Basic Information

• Taxon OID: 3300034073
• Scaffold ID: Ga0310130_0003902
• Source Dataset Name: Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6235
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (85.71%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.784
  • Long. (^o): -98.26
  • Depth (m): 2896

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000473	Metagenome / Metatranscriptome	1097	Y
F000671	Metagenome / Metatranscriptome	945	Y
F003582	Metagenome / Metatranscriptome	478	Y
F011938	Metagenome / Metatranscriptome	285	Y
F013878	Metagenome / Metatranscriptome	267	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310130_0003902_1200_1427	F013878	AGG	MLNLTELGVEVLIKRAKNVSPFWDNYDLVIWKKDINGFTNIKGMYRQNAWGTAERFSVTKQGIWKIPTRYVKHFK
Ga0310130_0003902_181_417	F000671	GAGG	MEKILCYSCNKTKNKLDVKKSSLLPINLLMCETCITSKFEPRWVIILAGRSNGAEHVKEYIQKKRYIGNEVSASELLV
Ga0310130_0003902_2516_2659	F003582	N/A	MNTYRVKLEVDAEVQAFSEDDAVDYINDIFGVDDEVKSVKIVNVKEK
Ga0310130_0003902_417_614	F011938	AGGGGG	VKEYYDIIYIVYIHSENCYGTVEKLGAFASLVKYNFAGEDIEEMLENEDFTIVDEIVHQHVEESN
Ga0310130_0003902_598_918	F000473	AGG	MFLNKKDPSDHFKYGINQWTGEPNKPVFYTEEMKKRVHAIPKPAMLLMDVVKYPDFLALRLYEDNFIQFDGTKKEIVIDYVSKVKKLIESYGVRCELEGVPSERVL