Scaffold Ga0310130_0003107

Overview

Basic Information

• Taxon OID: 3300034073
• Scaffold ID: Ga0310130_0003107
• Source Dataset Name: Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7267
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (47.06%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Cyanophyceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.784
  • Long. (^o): -98.26
  • Depth (m): 2896

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007025	Metagenome / Metatranscriptome	359	Y
F035291	Metagenome / Metatranscriptome	172	Y
F065739	Metagenome / Metatranscriptome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310130_0003107_2266_2433	F007025	GAGG	MILIDYFTEAVCQGTELIEGWYWYDDDDDNAVGGPYIDEDAAMAAAALNDQWGKK
Ga0310130_0003107_4098_4718	F035291	N/A	MTTTTKLQASPELLRRIDRLNGCQGHWLLIRDGEPETDCSHRWHQSPDSHLETCLAEHWRGVSLGFVPSYCGYSDYSRTGLVGLANYRCLTDPQSFPDPHDGILEVGYGWNGRGVVLDIRTVPDDAIEAVVELENYPLISDDEHSQLERDGINKLWADESICDRVRTLQDLGLCVFAARRASAPWELDSLHDSLTETLNEYPTIAA
Ga0310130_0003107_900_1280	F065739	GAG	MARINHAVEQLTTADSYTAFEGLETIRLTVTLPDWHQPFPSQERMGTANPRKLDMVGLLHVSRTWYINGPVMDQWTISTLNGPVQVPAGTVIETQELPDQWKALKRESSPGKQQWWAYANGRTSLC