Scaffold Ga0310130

Basic Information
Taxon OID	3300034073 Open in IMG/M
Scaffold ID	Ga0310130_0002695 Open in IMG/M
Source Dataset Name	Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034073 Open in IMG/M

Scaffold ID

Ga0310130_0002695 Open in IMG/M

Source Dataset Name

Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8114
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (75.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

8114

Total Scaffold Genes

20 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

15 (75.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	USA: Oklahoma
Coordinates	Lat. (^o)	35.784	Long. (^o)	-98.26	Alt. (m)	Depth (m)	2896
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Oklahoma

Coordinates

Lat. (^o)

35.784

Long. (^o)

-98.26

Alt. (m)

Depth (m)

2896

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F012344	Metagenome / Metatranscriptome	281	Y
F015339	Metagenome	255	Y
F020355	Metagenome / Metatranscriptome	224	N
F020904	Metagenome	221	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310130_0002695_3396_3611	F012344	GGAG	MKFTEVLDTLMEGKPITRTSWEDKYLYYDKDEEVFVYHYSEDCELMTWSLDLEPRDLIADDWDIDSWDTEE
Ga0310130_0002695_5327_5596	F015339	GGA	MEADPKIFSEQYIRGRIYSFVRFKKYLQEIANVFCEEFQYDKDDIIEVSLSDDGKTVWIHFDSGTLGFASELLWDQNVRETLRKSFEVD
Ga0310130_0002695_6309_6857	F020904	N/A	MDKLPKNQKYFYDIEIKKAKLNKAAINYIDPGEDYLPYAVENKHIGSSFDDFLKTNNIELKRDMNWALKMLGLGKIMTREGNRSLVLFPPQKSNNQDAKITVDDLFAEDWIVVRNKTFKEVLDDLYAGKTIRRISWHPSRGIGKFAQPYGATYLDLLADDWESVDVVAEVDKNQQDIKDGKF
Ga0310130_0002695_6982_8109	F020355	N/A	MDTIYDGGTLGLSSAPPHVSNGVMLMSPKSTANIAGDKVLHLTFEVDPHFSSRRWCDILLLPAGETVYSGKAADKIAMNTKSGKLFRWQIGAGSHNLNVDTGYNADGSRKSYNIPVKYADRNSIWSYPTPYRRVDYKTEYKVGTFVVNSITQSGSELNAKLSSKFIDGSKFPAFNLESSYSPRSGWIRFGEFGGAAEYEWTPETFKLIDDINFTSENWWTKQSSKDSLNKLMDAYCDNRSGAIIYRSKFNSVSGKYEGEIFFRPSVERRDYPLNRTWQGLDRRVQFDLYVSKNRVVITEDGYLVADSSLPVDFPFDEINVNFAHLIYHTGLEVFEQKTYQPDNSYWINFRPFADERHWDNMGFEVLTSFPDVKLL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0310130_0002695

Overview

Ecosystem & Geography

Associated Families

Sequences