Scaffold Ga0310130_0002587

Overview

Basic Information

• Taxon OID: 3300034073
• Scaffold ID: Ga0310130_0002587
• Source Dataset Name: Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8343
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.784
  • Long. (^o): -98.26
  • Depth (m): 2896

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029387	Metagenome / Metatranscriptome	188	Y
F038650	Metagenome / Metatranscriptome	165	Y
F078413	Metagenome / Metatranscriptome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310130_0002587_4572_6134	F029387	N/A	VGLERRLMANEPGGTRLADMQPRFDGGVNPISDDAVLAENQMRRAINARLTDYGAATKRGGTRRTSTAVLSAHAIANGYTWRRDSGNVDILVVGNGVLYTTTYGAFPWTYTAQSGTLSTTVTPTFAKFIDGTGADVIYIGDGGLLNKWNGSALTVDIAGTISATMLAVHNQRLYSCGCSTAPDSIFYSALNNGDTLGNGALDGGQIVVRTFGDENVVGLASINTSLLIFHRRGISRLTGFGQDDITVAPQAVSADVGLIAPKSIVANDNVAYFVSERGLYRCNEAEVAAVGTAQTPDPLLPIIRSLSSAQFDLVRSVFNRGTKELWVTMPGFGCYVYHTVLQAWAGPWDTGFVDPDTTALFETLDTAGLPVILKGDASGWVSLCDAPDVFRDNVAAAGTGGERYAMSVQAHRFYFGDEALAKSLRWAYLTAQLKGSDQTRVEWNTGDSFGSFTLPPSTDETWGGTGTYWGTGTWGGAGSQSYRVPLGGTGYYVDFSIIDSGDALPVFSRLQSEAFSLGRR
Ga0310130_0002587_6113_6751	F078413	GGA	MDAVQSTRWSDSFIQTVLNAVYDAEWSNILNAAPYYRFAQRNVTTDANGQVALTALDSGGGDNQQLLYRVMSVSDGNILYTETRFQDVPLATTTNYLPVYDRLYYLTGTYLQALPVAFGVGLYIGINYKPTALSDLASDASVLDWPPNSHLVLVYQGAYQLLLKGGAEAQSASYLKKLAEEERATMLDDLRRQTINPTRLAYPDQKWDWSGG
Ga0310130_0002587_7783_8343	F038650	N/A	SYGTLHGVAASSYPIWNTVRLTAGTDTPDANQPTESDIWDLIQRINGLSGKDAMTRPQEFLLMSTPGVTKKLMESMVAQRRFTAGEFSRTIKGGYRAVEVCGINMVQDYYVPAGTIYLLHIPSLAWVDAKDWGFVEFEGAGPWRWLQGRDAFETTYGWYGNLACLARNAHGIITGYTDTQRYSHVI