Scaffold Ga0310130

Basic Information
Taxon OID	3300034073 Open in IMG/M
Scaffold ID	Ga0310130_0002540 Open in IMG/M
Source Dataset Name	Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034073 Open in IMG/M

Scaffold ID

Ga0310130_0002540 Open in IMG/M

Source Dataset Name

Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8449
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (26.09%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

8449

Total Scaffold Genes

23 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (26.09%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	USA: Oklahoma
Coordinates	Lat. (^o)	35.784	Long. (^o)	-98.26	Alt. (m)	Depth (m)	2896
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Oklahoma

Coordinates

Lat. (^o)

35.784

Long. (^o)

-98.26

Alt. (m)

Depth (m)

2896

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009202	Metagenome / Metatranscriptome	321	N
F009600	Metagenome	315	Y
F011218	Metagenome / Metatranscriptome	293	N
F015723	Metagenome / Metatranscriptome	252	Y
F033779	Metagenome / Metatranscriptome	176	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310130_0002540_4899_5210	F009202	N/A	MYPSDDSHDLYIREKQLMLAGTAMWLAKQAADKANGREVQDEMLHHVMNCHYADLLLQQFIDYRQFIESKMNEMYLANAKMRVDNEEMHYEIERLQKIIEDNL
Ga0310130_0002540_6221_6658	F015723	N/A	MAKIVSITPTGQWQDLFKLEIRFDNGDFGTAFAKSQTPSYSVGDEVEYTKNEKGTIKIQRPNNFGGGGSFGGSFSNASKSSGDDRSASIIRQVALKAAVEYACAAGHDVNTILANAETFNKWMSGQSAAPASHSEHFATRNDSPF
Ga0310130_0002540_6846_7232	F009600	N/A	MRVPATGELKSYHVVVGKVPSLNAFYASKHWTVRAKAKDKHCAEVLQQLEEYDCVPIQHVYITCKVNYRYDIDNSIMAVKFALDAFRKWGGVKDDSRAYVRKLKLEHDPDIHPDTAEITFQGLVVSQS
Ga0310130_0002540_7205_7453	F011218	N/A	MSNQEKAQQLKESMSSMQYYTNPAKRRKIDFILAECASLFANCGSSYAERQQAKYKEQELLGQIAKLDLHFAIQCGYLQQEN
Ga0310130_0002540_8023_8430	F033779	N/A	MNLKKRKSLFVALTILIATLAGVSGCRTAQPILQSVIVKDTVIVTETKYLIDTLEVMKDTVIYQDKVRLQLQYIDRKVVVEATCLPDTIRVTQTKILTKQEPKVRKWTLESYLGALAFILTFAYLIKRWVDKLME

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0310130_0002540

Overview

Ecosystem & Geography

Associated Families

Sequences