Scaffold Ga0310130_0002466

Overview

Basic Information

• Taxon OID: 3300034073
• Scaffold ID: Ga0310130_0002466
• Source Dataset Name: Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8604
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (30.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.784
  • Long. (^o): -98.26
  • Depth (m): 2896

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032199	Metagenome / Metatranscriptome	180	Y
F036146	Metagenome / Metatranscriptome	170	Y
F059774	Metagenome / Metatranscriptome	133	N
F098941	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310130_0002466_1837_2004	F036146	GAGG	MTPCRTWKITTSEGKTIALGAISAKQAEHFILALRPDIKIALIEEIEPLPDSSQS
Ga0310130_0002466_3459_3689	F032199	AGGAGG	MSEAIKNEYCENPKSCMAVAYRRETGEELIPAGLDAAYAEIIDSFHGEMEEFVRKYCPKRLIELDAMMEQAFWQYH
Ga0310130_0002466_641_814	F059774	AGGAG	MAFFSDDDYDNDPELDWERPQRLNRQLSLQQLESRLELWKKKHDDLCLKLYRAATGI
Ga0310130_0002466_817_1155	F098941	N/A	MTVASPSFYRWGEKLSAFTADNRLVMSMGSPIANVPITIAELQSFVCTLEQAIDDEPNAGQRFALASIKIIFQASLNQAQKDYEEMVEKAPTGADLEEYMLAYSRAVKAGAF