Scaffold Ga0310130_0002436

Overview

Basic Information

• Taxon OID: 3300034073
• Scaffold ID: Ga0310130_0002436
• Source Dataset Name: Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8678
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.784
  • Long. (^o): -98.26
  • Depth (m): 2896

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008811	Metagenome / Metatranscriptome	327	N
F013987	Metagenome	266	Y
F032954	Metagenome	178	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310130_0002436_2_622	F032954	N/A	MTVYTPTYRVTIAGVVQTADILSGGTITYGRNDFFEATQPSYCNIELLNKDGASPVVELLDVVIIEVTNSAGSFVKLFTGEVSGVYNRLEAAGAGGKPNTLQIQAIGALGLLVKRTAGAVSYPEELDGARIQRILEETLFIAWEDLSNTQTWNDFTTETWDTYGIQGIDTIDAGRYEVLARAAQIEQAFNLTDETQQSGLGYLYDTT
Ga0310130_0002436_2815_3222	F008811	AGG	MATTILSGRQLILSVNGVNYSEQITSSAINFDTERLTFDTLAGKAYKYIDSNVTLDVEFLNDAGASPNSLYKVLWDGTESAPDTTIAFIMTLQTGVTLTGFVLPQYPSITGSGADVQTCSVSLQVVGIPTEDLTA
Ga0310130_0002436_8294_8617	F013987	AGGAG	MIKEEKHRILPALDRAHEEALRQGIITALDAAGMAMAYTLAGVLDGGTLKPIEEVKYMGQLQQILDKYGLSLYGRKEKPELETGEDPIDNLRKLNPENTDHTTSSPN