Scaffold Ga0310130

Basic Information
Taxon OID	3300034073 Open in IMG/M
Scaffold ID	Ga0310130_0002089 Open in IMG/M
Source Dataset Name	Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034073 Open in IMG/M

Scaffold ID

Ga0310130_0002089 Open in IMG/M

Source Dataset Name

Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9749
Total Scaffold Genes	22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (9.09%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

9749

Total Scaffold Genes

22 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (9.09%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	USA: Oklahoma
Coordinates	Lat. (^o)	35.784	Long. (^o)	-98.26	Alt. (m)	Depth (m)	2896
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Oklahoma

Coordinates

Lat. (^o)

35.784

Long. (^o)

-98.26

Alt. (m)

Depth (m)

2896

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006181	Metagenome / Metatranscriptome	379	Y
F012446	Metagenome / Metatranscriptome	280	N
F015582	Metagenome / Metatranscriptome	253	Y
F029411	Metagenome / Metatranscriptome	188	Y
F082581	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310130_0002089_4748_4900	F029411	N/A	MNVDFSTIDPQNELSDLYTPDYREQAINEDAYLDQAYEDRFECACMEDYQ
Ga0310130_0002089_6683_7039	F006181	N/A	MKKNLIHVIYPDEAVNSFVMTTDMSTADILERVFAEWNHGSGMECEMFIKSKKRSLCVNDIVCVNGVYFQCASFGWNEVTAQYVNELEESVAAHPSRVEGAWFALMDVMWERQNIVVA
Ga0310130_0002089_7105_7449	F082581	N/A	MNNVTNDSNMNATSTKTAKVGRPAKNLKLILNKSFTLKDLQTLNPDVKAVTIRAAVLRGLSNGKFTKLPRNVQTGRKGKPANIFINSKVYKANLANLAKSKVTVNVNEPSTVTA
Ga0310130_0002089_7615_8187	F012446	N/A	MKKLQKEFTGNYDKVGMNKFVQIKKENSVAIYQRFNTDGTPRSYEVFIVKVVPKGAPLPNGKTVEESYEQYPGANAFGKTAYDCRTIAQAEERFDQLVIKAKDSAEAKEEAAKTGVRNRGRRGTSKKVKLDMTLNKGTKFTAKFLMSVLGVSQPVLFPILKQWEKEGSIKVNGTVKGEGKGRPATEYIVV
Ga0310130_0002089_8234_8530	F015582	N/A	MPDIDPELQAEQLEDAKYLEELNHYVNTLSAPSAESVALYRAKISMLEDIHTEIRAKYPGFMPVYDALSDPEYNQAIGKYQENTYSFSSRDLRSSSNS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0310130_0002089

Overview

Ecosystem & Geography

Associated Families

Sequences